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AT2G34260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD repeat protein 55 (InterPro:IPR017422), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 21772 Blast hits to 13043 proteins in 620 species: Archae - 50; Bacteria - 4645; Metazoa - 7300; Fungi - 4653; Plants - 2070; Viruses - 0; Other Eukaryotes - 3054 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZHU5eggNOG:KOG2444EMBL:AC004481EMBL:AK117481EMBL:AY087666EMBL:BT005438EMBL:CP002685
EnsemblPlants:AT2G34260EnsemblPlants:AT2G34260.1EnsemblPlants:AT2G34260.2entrez:817987ExpressionAtlas:O80775Gene3D:2.130.10.10GeneID:817987
Genevisible:O80775GO:GO:0005634GO:GO:0005737GO:GO:0009553GO:GO:0009793GO:GO:0009855GO:GO:0009960
GO:GO:0010197GO:GO:0042273hmmpanther:PTHR22840HOGENOM:HOG000242496InParanoid:O80775InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017422InterPro:IPR017986InterPro:IPR019775InterPro:IPR024977iPTMnet:O80775KEGG:ath:AT2G34260OMA:YTHHFDF
PaxDb:O80775Pfam:PF00400Pfam:PF12894Pfscan:PS50082Pfscan:PS50294PhylomeDB:O80775PIR:T02314
PIRSF:PIRSF038169PRIDE:O80775PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:O80775Proteomes:UP000006548
RefSeq:NP_565782.1RefSeq:NP_973596.1scanprosite:PS00678SMART:SM00320SMR:O80775STRING:3702.AT2G34260.1SUPFAM:SSF50978
TAIR:AT2G34260UniGene:At.37828UniProt:O80775
Coordinates (TAIR10) chr2:+:14465899..14468416
Molecular Weight (calculated) 38427.80 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.33
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIDLGANAF GIDFHPSTNL VAAGLIDGHL HLYRYDSDSS LVRERKVRAH KESCRAVRFI DDGQRIVTAS ADCSILATDV ETGAQVAHLE NAHEDAVNTL
101: INVTETTIAS GDDKGCVKIW DTRQRSCSHE FNAHEDYISG MTFASDSMKL VVTSGDGTLS VCNLRTSKVQ SQSEFSEDEL LSVVIMKNGR KVICGTQNGT
201: LLLYSWGFFK DCSDRFVDLA PNSVDALLKL DEDRLITGCD NGIISLVGIL PNRIIQPIGS HDYPIEDLAL SHDKKFLGST AHDSMLKLWN LEEILEGSNV
301: NSGNASGAAE DSDSDNDGMD LDNDPSKSSK GSKRKTKSKA NTLNATNNFF ADL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)