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AT2G34200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AY247802EMBL:CP002685EnsemblPlants:AT2G34200EnsemblPlants:AT2G34200.1entrez:817981
Gene3D:3.30.40.10GeneID:817981GO:GO:0008270GO:GO:0016020GO:GO:0016021Gramene:AT2G34200.1hmmpanther:PTHR23012
hmmpanther:PTHR23012:SF76InterPro:IPR011016InterPro:IPR013083InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
KEGG:ath:AT2G34200OMA:LIEIGCKPANTHER:PTHR23012Pfam:PF12906Pfscan:PS51292PhylomeDB:Q84RF4PROSITE:PS51292
Proteomes:UP000006548RefSeq:NP_180967.2SMART:SM00744SMR:Q84RF4STRING:3702.AT2G34200.1SUPFAM:SSF57850TAIR:AT2G34200
TMHMM:TMhelixUniGene:At.47757unipathway:UPA00143UniProt:Q84RF4
Coordinates (TAIR10) chr2:+:14441105..14441882
Molecular Weight (calculated) 24661.10 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.47
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPKSCENSS DVKGQTSDSV SKKVLIEEEE DVKKPQQGKE NDSRMAKDVV SCSSNISAHV VHEEVADNVT AVSCNEAESD ISKAKAKEFH TIDLSGVGER
101: ICRICHFGSD QSPEASGDDK SVSPELIEIG CKCKNELGLA HFHCAEAWFK LRGNSVCEIC GCTAKNVTVR LMEDWSGERD NTLDGRRRRG RGQSCCIFMV
201: FLLTILLLHW FFKKISGYYQ NT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)