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AT2G34160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alba DNA/RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775), Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G29250.1); Has 155 Blast hits to 155 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
DNASU:817977eggNOG:ENOG410IXHYeggNOG:ENOG41121TCEMBL:BT026504
EnsemblPlants:AT2G34160EnsemblPlants:AT2G34160.1entrez:817977ExpressionAtlas:Q0V7R6
Gene3D:3.30.110.20GeneID:817977GO:GO:0003676Gramene:AT2G34160.1
hmmpanther:PTHR31947hmmpanther:PTHR31947:SF3InterPro:IPR002775InterPro:IPR014560
KEGG:ath:AT2G34160ncoils:CoilOMA:KIEITLVPaxDb:Q0V7R6
PDB:1VM0PDB:2Q3VPfam:O22969Pfam:PF01918
PhylomeDB:Q0V7R6PIRSF:PIRSF030333PRIDE:Q0V7R6ProteinModelPortal:Q0V7R6
RefSeq:NP_565781.1SMR:Q0V7R6STRING:3702.AT2G34160.1SUPFAM:SSF82704
TAIR:AT2G34160UniGene:At.37844UniProt:O22969UniProt:Q0V7R6
Coordinates (TAIR10) chr2:+:14426283..14427220
Molecular Weight (calculated) 14617.50 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.48
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEITDGVNN MNLATDSQKK NRIQVSNTKK PLFFYVNLAK RYMQQYNDVE LSALGMAIAT VVTVTEILKN NGFAVEKKIM TSTVDIKDDA RGRPVQKAKI
101: EITLVKSEKF DELMAAANEE KEDAEAQVQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)