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AT2G34020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.921
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G34030.1); Has 248 Blast hits to 226 proteins in 52 species: Archae - 0; Bacteria - 2; Metazoa - 23; Fungi - 2; Plants - 158; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT87eggNOG:ENOG411083FEMBL:AK117383EMBL:CP002685EnsemblPlants:AT2G34020EnsemblPlants:AT2G34020.1entrez:817963
Gene3D:1.10.238.10GeneID:817963GO:GO:0005509GO:GO:0016021Gramene:AT2G34020.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF639
HOGENOM:HOG000148342InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247KEGG:ath:AT2G34020OMA:CDINEFAPfam:PF13202
Pfam:PF13499Pfscan:PS50222PhylomeDB:Q8GYU6PROSITE:PS00018PROSITE:PS50222Proteomes:UP000006548RefSeq:NP_180949.2
scanprosite:PS00018SMART:SM00054SMR:Q8GYU6SUPFAM:SSF47473TAIR:AT2G34020TMHMM:TMhelixUniGene:At.45992
UniProt:Q8GYU6
Coordinates (TAIR10) chr2:-:14371292..14373703
Molecular Weight (calculated) 68265.70 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.22
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTFSFKRRP NHSHFPSTLF FFFLSLTLFI SGVSSRVLSP VPLDNSSLIS DGVHGASDYK YLTLDPPKNV SKAACIHVYG FLPCADNIGG YVFQVFSFGC
101: LLIIGDYFLS QGRSKLFVIF EVGFYGGIVF PLLTMFPRIA LMISPGLAAT HEGALMIVGN NVGVTIGHTI FALTMQWGAC VIFGLTSPNS DPSIRRGSIK
201: RTSSDTKNPR RGFYRMKILK SVVEASVDAD PKNKKAAGIM LLTLVPFLLV TLPDLLDVQS WSDIIMLITL IISCSSTFIY FVYSYFDTAD QKKSLDHAKF
301: ELMSEVHKHL QSFSPRTLIR DGQLSKESLK SLFDKIDRNK DGKIQISELK DLTVEFGVFG KMKCDINEFA STLLAEFDKD KNGELDENEF EEGIMKLLNH
401: YKFDNQESPR QNNTYIYRTP SDSVKSLSQG EEAGVLKLEM PKQTLVAKFL SMSTLRAVTK VIGGMLIVVF LAKPFMVNIG LLSVSAGVPS FYSVFAVIPL
501: VRNLKNTLSA HFCRKKDKAR IASEKFSEIY RDVTMNNLMG MSITLAIVYS RGLKWEYSIE SLLVVVVGIA IGLPAYVRST YPFWICVMAF AMYIFSLVLI
601: YIHFHLRGQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)