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AT2G33880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox-3
Curator
Summary (TAIR10)
Encodes a protein with similarity to WUS type homeodomain protein. Required for meristem growth and development and acts through positive regulation of WUS. Loss of function phenotypes include embryo lethality, hyponastic cotyledons, reduced root development and smaller meristems. Phenotypes can be rescued by addition of sucrose in the growth media. Overexpression can partially rescue the triple mutant cytokinin receptor phenotype suggesting HB-3 is a downstream effector of cytokinin signaling.
Computational
Description (TAIR10)
homeobox-3 (HB-3); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 8 (TAIR:AT5G45980.1); Has 671 Blast hits to 615 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 22; Plants - 589; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:3305eggNOG:ENOG410IWJYeggNOG:ENOG410Y94HEMBL:AK118501EMBL:AY251401EMBL:BT005296EMBL:CP002685
EMBL:U78721EnsemblPlants:AT2G33880EnsemblPlants:AT2G33880.1entrez:817958Gene3D:1.10.10.60GeneID:817958Genevisible:Q6X7J4
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0008284GO:GO:0009793GO:GO:0010075
GO:GO:0044212Gramene:AT2G33880.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF212HOGENOM:HOG000154860InParanoid:Q6X7J4IntAct:Q6X7J4
InterPro:IPR001356InterPro:IPR009057KEGG:ath:AT2G33880OMA:INDIMLPPaxDb:Q6X7J4Pfam:PF00046Pfam:Q6X7J4
Pfscan:PS50071PhylomeDB:Q6X7J4PIR:G84750PRIDE:Q6X7J4PRO:PR:Q6X7J4PROSITE:PS50071ProteinModelPortal:Q6X7J4
Proteomes:UP000006548RefSeq:NP_180944.2SMART:SM00389STRING:3702.AT2G33880.1SUPFAM:SSF46689TAIR:AT2G33880tair10-symbols:HB-3
tair10-symbols:STIPtair10-symbols:WOX9UniGene:At.14699UniProt:Q6X7J4
Coordinates (TAIR10) chr2:-:14341639..14343597
Molecular Weight (calculated) 42091.60 Da
IEP (calculated) 9.06
GRAVY (calculated) -0.66
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)