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AT2G33870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.930
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A1H
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A1H (ArRABA1h); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1I (TAIR:AT1G28550.1); Has 27076 Blast hits to 27025 proteins in 750 species: Archae - 25; Bacteria - 157; Metazoa - 14072; Fungi - 4066; Plants - 2934; Viruses - 20; Other Eukaryotes - 5802 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0087EMBL:CP002685EMBL:DQ446594EMBL:U78721EnsemblPlants:AT2G33870EnsemblPlants:AT2G33870.1
entrez:817957Gene3D:3.40.50.300GeneID:817957Genevisible:Q1PEX3GO:GO:0005525GO:GO:0005622GO:GO:0005886
GO:GO:0007264GO:GO:0015031Gramene:AT2G33870.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF457HOGENOM:HOG000233968InParanoid:Q1PEX3
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT2G33870KO:K07976OMA:QTIHIGNPaxDb:Q1PEX3
Pfam:PF00071Pfam:Q1PEX3Pfscan:PS51419PhylomeDB:Q1PEX3PIR:F84750PRIDE:Q1PEX3PRO:PR:Q1PEX3
PROSITE:PS51419ProteinModelPortal:Q1PEX3Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_180943.4SMR:Q1PEX3STRING:3702.AT2G33870.1
SUPFAM:SSF52540TAIR:AT2G33870tair10-symbols:ArRABA1hTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.66305UniProt:Q1PEX3
Coordinates (TAIR10) chr2:-:14337366..14338251
Molecular Weight (calculated) 24338.60 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.35
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTYKAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRSTIGVEF ATRSIQVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANTV IMLVGNKADL NHLRAISTEE VKDFAERENT FFMETSALEA INVENAFTEV LTQIYRVVSK KALDAGDDPT TALPKGQMIN
201: VGSRDDVSAV KKSGCCAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)