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AT2G33800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S5 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cadmium ion, response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5, bacterial-type (InterPro:IPR005712), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G64880.1); Has 8967 Blast hits to 8967 proteins in 2880 species: Archae - 262; Bacteria - 5121; Metazoa - 552; Fungi - 265; Plants - 165; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).
Protein Annotations
BioGrid:3294eggNOG:COG0098eggNOG:KOG0877EMBL:AY054523EMBL:AY087734EMBL:AY093289EMBL:CP002685
EMBL:U78721EnsemblPlants:AT2G33800EnsemblPlants:AT2G33800.1entrez:817947Gene3D:3.30.160.20Gene3D:3.30.230.10GeneID:817947
Genevisible:P93014GO:GO:0003735GO:GO:0005634GO:GO:0005763GO:GO:0006412GO:GO:0009409GO:GO:0009507
GO:GO:0009534GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0016020GO:GO:0019843GO:GO:0046686
Gramene:AT2G33800.1HAMAP:MF_01307_Bhmmpanther:PTHR13718HOGENOM:HOG000072595InParanoid:P93014InterPro:IPR000851InterPro:IPR005324
InterPro:IPR005712InterPro:IPR013810InterPro:IPR014720InterPro:IPR014721InterPro:IPR018192InterPro:IPR020568KEGG:ath:AT2G33800
KO:K02988OMA:PYFDEGSPANTHER:PTHR13718PaxDb:P93014Pfam:P93014Pfam:PF00333Pfam:PF03719
Pfscan:PS50881PhylomeDB:P93014PIR:G84749PRIDE:P93014PRO:PR:P93014PROSITE:PS00585PROSITE:PS50881
ProteinModelPortal:P93014Proteomes:UP000006548RefSeq:NP_180936.1scanprosite:PS00585SMR:P93014STRING:3702.AT2G33800.1SUPFAM:SSF54211
SUPFAM:SSF54768TAIR:AT2G33800TIGRfam:TIGR01021TIGRFAMs:TIGR01021UniGene:At.24873UniProt:P93014World-2DPAGE:0003:P93014
Coordinates (TAIR10) chr2:-:14300925..14302352
Molecular Weight (calculated) 32647.00 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.24
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MATASALSSL SSLSLHTRTS SLISSSSTKS IVSFSSFLNR RFSSLTLVKA SSTDTETIFF EDETPEITAN VVFDPPIAPE GFVSPPYFDE GSDETEEEIA
101: TAFEELYGPA YSGESMLGKD IYVMDSKHKK SSGIGGKPKK DKIRDGFEER VVQVRRVTKV VKGGKQLKFR AIVVVGDKQG NVGVGCAKAK EVVAAVQKSA
201: IDARRNIVQV PMTKYSTFPH RSEGDYGAAK VMLRPASPGT GVIAGGAVRI VLEMAGVENA LGKQLGSNNA LNNARATLAA VQQMRQFRDV AQERGIPMEE
301: LWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)