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AT2G33730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-546-MONOMERBioGrid:3285EC:3.6.4.13eggNOG:ENOG410XNVGeggNOG:KOG0333EMBL:AY065194EMBL:AY093244
EMBL:CP002685EMBL:U78721EnsemblPlants:AT2G33730EnsemblPlants:AT2G33730.1entrez:817938Gene3D:3.40.50.300GeneID:817938
Genevisible:P93008GO:GO:0003723GO:GO:0004386GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0006397
GO:GO:0008380Gramene:AT2G33730.1hmmpanther:PTHR24031HOGENOM:HOG000268796InParanoid:P93008InterPro:IPR000629InterPro:IPR001650
InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT2G33730KO:K12858MINT:MINT-8060006
ncoils:CoilOMA:EYMPVSNPaxDb:P93008Pfam:P93008Pfam:PF00270Pfam:PF00271Pfscan:PS51192
Pfscan:PS51194Pfscan:PS51195PhylomeDB:P93008PIR:H84748PRIDE:P93008PRO:PR:P93008PROSITE:PS00039
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:P93008Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_180929.1scanprosite:PS00039SMART:SM00487SMART:SM00490SMR:P93008STRING:3702.AT2G33730.1SUPFAM:SSF52540
TAIR:AT2G33730UniGene:At.27506UniProt:P93008
Coordinates (TAIR10) chr2:-:14265679..14267880
Molecular Weight (calculated) 85282.10 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.99
Length 733 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)