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AT2G33680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.968
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 49646 Blast hits to 13771 proteins in 238 species: Archae - 0; Bacteria - 6; Metazoa - 50; Fungi - 74; Plants - 48928; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:CP002685EMBL:U78721
EnsemblPlants:AT2G33680EnsemblPlants:AT2G33680.1entrez:817933Gene3D:1.25.40.10
GeneID:817933Genevisible:P93005Gramene:AT2G33680.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF47HOGENOM:HOG000237570InParanoid:P93005InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT2G33680OMA:KNSITWSPaxDb:P93005
Pfam:P93005Pfam:PF01535Pfam:PF12854Pfam:PF13041
Pfam:PF13812Pfscan:PS51375PhylomeDB:P93005PIR:C84748
PRIDE:P93005PRO:PR:P93005PROSITE:PS51375ProteinModelPortal:P93005
Proteomes:UP000006548RefSeq:NP_180924.1SMR:P93005STRING:3702.AT2G33680.1
TAIR:AT2G33680TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.66302
UniProt:P93005
Coordinates (TAIR10) chr2:+:14249608..14251791
Molecular Weight (calculated) 80313.60 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.02
Length 727 amino acids
Sequence (TAIR10)
(BLAST)
001: MHPSTFQTEL NPHTSTLLKK LTHHSQQRNL VAGRAVHGQI IRTGASTCIQ HANVLVNFYA KCGKLAKAHS IFNAIICKDV VSWNSLITGY SQNGGISSSY
101: TVMQLFREMR AQDILPNAYT LAGIFKAESS LQSSTVGRQA HALVVKMSSF GDIYVDTSLV GMYCKAGLVE DGLKVFAYMP ERNTYTWSTM VSGYATRGRV
201: EEAIKVFNLF LREKEEGSDS DYVFTAVLSS LAATIYVGLG RQIHCITIKN GLLGFVALSN ALVTMYSKCE SLNEACKMFD SSGDRNSITW SAMVTGYSQN
301: GESLEAVKLF SRMFSAGIKP SEYTIVGVLN ACSDICYLEE GKQLHSFLLK LGFERHLFAT TALVDMYAKA GCLADARKGF DCLQERDVAL WTSLISGYVQ
401: NSDNEEALIL YRRMKTAGII PNDPTMASVL KACSSLATLE LGKQVHGHTI KHGFGLEVPI GSALSTMYSK CGSLEDGNLV FRRTPNKDVV SWNAMISGLS
501: HNGQGDEALE LFEEMLAEGM EPDDVTFVNI ISACSHKGFV ERGWFYFNMM SDQIGLDPKV DHYACMVDLL SRAGQLKEAK EFIESANIDH GLCLWRILLS
601: ACKNHGKCEL GVYAGEKLMA LGSRESSTYV QLSGIYTALG RMRDVERVWK HMRANGVSKE VGCSWIELKN QYHVFVVGDT MHPMIEETKD LVCLVSRQMI
701: EEGFVTVLDS SFVEEEEGTQ LSTSFII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)