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AT2G33610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : switch subunit 3
Curator
Summary (TAIR10)
Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.
Computational
Description (TAIR10)
switch subunit 3 (SWI3B); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 1055 Blast hits to 780 proteins in 192 species: Archae - 0; Bacteria - 2; Metazoa - 438; Fungi - 310; Plants - 199; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
Protein Annotations
BioGrid:3274eggNOG:COG5259eggNOG:KOG1279EMBL:AC002332
EMBL:BT004085EMBL:BT005094EMBL:CP002685EnsemblPlants:AT2G33610
EnsemblPlants:AT2G33610.1entrez:817927Gene3D:1.10.10.10Gene3D:1.10.10.60
GeneID:817927Genevisible:Q84JG2GO:GO:0003677GO:GO:0005634
GO:GO:0006338GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0016514Gramene:AT2G33610.1hmmpanther:PTHR12802hmmpanther:PTHR12802:SF44
HOGENOM:HOG000238867InParanoid:Q84JG2IntAct:Q84JG2InterPro:IPR001005
InterPro:IPR007526InterPro:IPR009057InterPro:IPR011991InterPro:IPR017884
InterPro:IPR032451iPTMnet:Q84JG2KEGG:ath:AT2G33610KO:K11649
ncoils:CoilOMA:TVCGLAYPaxDb:Q84JG2Pfam:PF00249
Pfam:PF04433Pfam:PF16495Pfam:Q84JG2Pfscan:PS50934
Pfscan:PS51293PhylomeDB:Q84JG2PIR:F84747PRIDE:Q84JG2
PRO:PR:Q84JG2PROSITE:PS50934PROSITE:PS51293ProteinModelPortal:Q84JG2
Proteomes:UP000006548RefSeq:NP_180919.2SMART:SM00717SMR:Q84JG2
STRING:3702.AT2G33610.1SUPFAM:SSF46689TAIR:AT2G33610tair10-symbols:ATSWI3B
tair10-symbols:CHB2tair10-symbols:SWI3BUniGene:At.43725UniProt:Q84JG2
Coordinates (TAIR10) chr2:+:14229023..14231149
Molecular Weight (calculated) 52413.10 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.59
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)