AT2G33570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF23) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 195 Blast hits to 195 proteins in 24 species: Archae - 2; Bacteria - 7; Metazoa - 43; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14217361..14219043 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56867.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||
| Length | 496 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKEVLPPVL STTTVCFEKK PIIATLLALS LVMIVWNLPP YYHNLISTAR PCSAVTTTTT TTLLSSSNFT SAENFTTSLS TTTAAASQKY DSTPSDPNKR 101: VFQPFGNAAA LFVLMGAYRG GPTTFSVIGL ASKPIHVYGK PWYKCEWISN NGTSIRAKAQ KILPDWGYGR VYTVVVVNCT FNSNPNSDNT GGKLILNAYY 201: NESPKLFERF TTLEESAGIY DESKYSPPYQ YDYLYCGSSL YGNVSASRMR EWMAYHAWFF GDKSHFVFHD AGGVSPEVRK VLEPWIRAGR VTVQNIRDQS 301: QYDGYYYNQF LIVNDCLHRY RYAANWTFFF DVDEYIYLPH GNTLESVLDE FSVNTQFTIE QNPMSSVLCI NDSSQDYPRQ WGFEKLLFKD SRTKIRRDRK 401: YAIQAKNAFA TGVHMSENIV GKTLHKTETK IRYYHYHNTI TVHEELCREM LPNSAKKKVT LYNKLPYVYD DNMKKLVKTI KEFEQKKLGT DVKNFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)