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AT2G33570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23243126 (2012): extracellular region plant-type cell wall
  • PMID:23243126 (2012): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF23)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 195 Blast hits to 195 proteins in 24 species: Archae - 2; Bacteria - 7; Metazoa - 43; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410Z7P2eggNOG:KOG4735EMBL:AC002332EMBL:AY084834EMBL:AY140059EMBL:BT008868
EMBL:CP002685EMBL:KJ138875EnsemblPlants:AT2G33570EnsemblPlants:AT2G33570.1entrez:817922GeneID:817922GO:GO:0000139
GO:GO:0005794GO:GO:0016021GO:GO:0042546GO:GO:0045489GO:GO:0048531GO:GO:0071555Gramene:AT2G33570.1
hmmpanther:PTHR21461hmmpanther:PTHR21461:SF12HOGENOM:HOG000241963InterPro:IPR008166KEGG:ath:AT2G33570OMA:QDYPRQWPaxDb:O22807
Pfam:PF01697PhylomeDB:O22807PIR:B84747Proteomes:UP000006548RefSeq:NP_565768.1STRING:3702.AT2G33570.1TAIR:AT2G33570
TMHMM:TMhelixUniGene:At.12133UniProt:O22807
Coordinates (TAIR10) chr2:+:14217361..14219043
Molecular Weight (calculated) 56867.40 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.40
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKEVLPPVL STTTVCFEKK PIIATLLALS LVMIVWNLPP YYHNLISTAR PCSAVTTTTT TTLLSSSNFT SAENFTTSLS TTTAAASQKY DSTPSDPNKR
101: VFQPFGNAAA LFVLMGAYRG GPTTFSVIGL ASKPIHVYGK PWYKCEWISN NGTSIRAKAQ KILPDWGYGR VYTVVVVNCT FNSNPNSDNT GGKLILNAYY
201: NESPKLFERF TTLEESAGIY DESKYSPPYQ YDYLYCGSSL YGNVSASRMR EWMAYHAWFF GDKSHFVFHD AGGVSPEVRK VLEPWIRAGR VTVQNIRDQS
301: QYDGYYYNQF LIVNDCLHRY RYAANWTFFF DVDEYIYLPH GNTLESVLDE FSVNTQFTIE QNPMSSVLCI NDSSQDYPRQ WGFEKLLFKD SRTKIRRDRK
401: YAIQAKNAFA TGVHMSENIV GKTLHKTETK IRYYHYHNTI TVHEELCREM LPNSAKKKVT LYNKLPYVYD DNMKKLVKTI KEFEQKKLGT DVKNFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)