AT2G33490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.1); Has 1387 Blast hits to 1097 proteins in 177 species: Archae - 4; Bacteria - 37; Metazoa - 593; Fungi - 281; Plants - 163; Viruses - 19; Other Eukaryotes - 290 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14183552..14187666 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69384.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTSLRRLRG VLHKHESKDR RDLRALVQKD ELAQASQDVE DMRDCYDSLL NAAAATANSA YEFSESLREL GACLLEKTAL NDDEESGRVL IMLGKLQFEL 101: QKLVDKYRSH IFQTITIPSE SLLNELRIVE EMQRLCDEKR NVYEGMLTRQ REKGRSKGGK GETFSPQQLQ EAHDDYENET TLFVFRLKSL KQGQTRSLLT 201: QAARHHAAQL CFFKKALSSL EEVDPHVQMV TESQHIDYHF SGLEDDDGDD EIENNENDGS EVHDDGELSF EYRVNDKDQD ADSSAGGSSE LGNSDITFPQ 301: IGGPYTAQEN EEGNYRKSHS FRRDVRAVSQ SAPLFPENRT TPPSEKLLRM RSTLTRKFNT YALPTPVETT RSPSSTTSPG HKNVGSSNPT KAITKQIWYS 401: SPLETRGPAK VSSRSMVALK EQVLRESNKN TSRLPPPLAD GLLFSRLGTL KRRSFSGPLT SKPLPNKPLS TTSHLYSGPI PRNPVSKLPK VSSSPTASPT 501: FVSTPKISEL HELPRPPPRS STKSSRELGY SAPLVSRSQL LSKPLITNSA SPLPIPPAIT RSFSIPTSNL RASDLDMSKT SLGTKKLGTP SPPLTPMSLI 601: HPPPQALPER ADHLMMSKQE RRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)