suba logo
AT2G33470.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 0.884
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycolipid transfer protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycolipid transfer protein 1 (GLTP1); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3); Has 607 Blast hits to 606 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 298; Fungi - 124; Plants - 134; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Protein Annotations
DNASU:817912eggNOG:ENOG410YFEAeggNOG:KOG3221EMBL:AC002332EMBL:AK317264EMBL:AY085884EMBL:BT004207
EMBL:BT005674EMBL:CP002685EnsemblPlants:AT2G33470EnsemblPlants:AT2G33470.1EnsemblPlants:AT2G33470.2entrez:817912Gene3D:1.10.3520.10
GeneID:817912Genevisible:O22797GO:GO:0005829GO:GO:0005886GO:GO:0017089GO:GO:0051861Gramene:AT2G33470.1
Gramene:AT2G33470.2hmmpanther:PTHR10219hmmpanther:PTHR10219:SF36HOGENOM:HOG000199421InterPro:IPR014830KEGG:ath:AT2G33470OMA:HQDWTMS
PaxDb:O22797Pfam:O22797Pfam:PF08718PhylomeDB:O22797PIR:H84745PRIDE:O22797PRO:PR:O22797
ProteinModelPortal:O22797Proteomes:UP000006548Reactome:R-ATH-1660662RefSeq:NP_565766.1RefSeq:NP_973588.1SMR:O22797STRING:3702.AT2G33470.1
SUPFAM:0043785SUPFAM:SSF110004TAIR:AT2G33470tair10-symbols:ATGLTP1tair10-symbols:GLTP1UniGene:At.12126UniProt:O22797
Coordinates (TAIR10) chr2:-:14176599..14177950
Molecular Weight (calculated) 22741.60 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.16
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGTVFTPCL EGMKHVKSDQ GEMLTKPFLE LCKTILPVID KFGAAMTLVK SDIGGNITRL EKNYLSDPDK FKYLYTFVQV EIESKIAKGS SSCTNGLLWL
101: TRAMDFLVEL FRNLVAHQDW SMPQACADSY QKTLKKWHGW LASSTFSMAL KLAPDRKKFM DVISGSGNIQ ADMERFCAEF GPFLHDNHKF LASVGMDDMK
201: AS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)