AT2G33460.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ROP-interactive CRIB motif-containing protein 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROP-interactive CRIB motif-containing protein 1 (RIC1); FUNCTIONS IN: protein binding; INVOLVED IN: cell morphogenesis, pollen tube growth, cellulose microfibril organization, cytoplasmic microtubule organization; LOCATED IN: cortical microtubule, transverse to long axis, apical plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 3 (TAIR:AT1G04450.1); Has 393 Blast hits to 355 proteins in 75 species: Archae - 0; Bacteria - 15; Metazoa - 105; Fungi - 14; Plants - 178; Viruses - 2; Other Eukaryotes - 79 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:14174590..14175561 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24140.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.61 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 224 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTMKGLLK GLRYITQIFD EEKEQEMQIG FPTDVKHVAH IGSDGPTNTT PSWMNDFKTQ EHEKGQVVSR GNSNKYNPQG TNQRGAGLKE LLPSNTNEKP 101: KQKTRRKPGG AASPNHNGSP PRKSSGNAAS SDEPSKHSRH NRSAHGSTDS SNDQEPSVRR RRGGIPAPDT EVPNQIPDGS APPRKATSRP RKLKGSSAGG 201: EGSIKKSSKG KPENSVDTTC NDII |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)