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AT2G33440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.814
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 807 Blast hits to 787 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 101; Plants - 250; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP92eggNOG:KOG0120EMBL:CP002685EnsemblPlants:AT2G33440EnsemblPlants:AT2G33440.1entrez:817909Gene3D:3.30.70.330
GeneID:817909GO:GO:0000166GO:GO:0003676Gramene:AT2G33440.1hmmpanther:PTHR23139hmmpanther:PTHR23139:SF56InParanoid:F4IVU8
InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT2G33440KO:K12837OMA:CARFGTVPaxDb:F4IVU8Pfam:PF00076
PRIDE:F4IVU8ProteinModelPortal:F4IVU8Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72187RefSeq:NP_850210.2SMR:F4IVU8
STRING:3702.AT2G33440.1SUPFAM:SSF54928TAIR:AT2G33440UniGene:At.45856UniProt:F4IVU8
Coordinates (TAIR10) chr2:+:14171619..14173226
Molecular Weight (calculated) 35742.70 Da
IEP (calculated) 4.19
GRAVY (calculated) -0.47
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMEIVSVFG PLKAYRFVSN NDLNQRCAFL EYTDGSVTLK ACAGLNGMRL GGSVITAVCA FPDASSVAVN ENPPFYGIPS HAKPLLGKPK NILKLKNVVD
101: PEDLTSFSEQ EVKEILEDVR LECARFGVIK SINILEHKSK DITVSETNPL LNLESTDSKE MNVSVIEEKD EGSEKAEDIA DNVDLAEVVM PDSLTGEDKL
201: CEPCSDTAAE TSTQENEDLH STEQEHCEKI VEESAQAEAE NPQEVASVRT VKTRWDAGDK IEEEQEEDPE DVFETGCIFI EYRRPEATCD AAHSLHGRLY
301: DNRIVKAEYV SKELYQIRFP SG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)