AT2G33440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 807 Blast hits to 787 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 101; Plants - 250; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14171619..14173226 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35742.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 322 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLMEIVSVFG PLKAYRFVSN NDLNQRCAFL EYTDGSVTLK ACAGLNGMRL GGSVITAVCA FPDASSVAVN ENPPFYGIPS HAKPLLGKPK NILKLKNVVD 101: PEDLTSFSEQ EVKEILEDVR LECARFGVIK SINILEHKSK DITVSETNPL LNLESTDSKE MNVSVIEEKD EGSEKAEDIA DNVDLAEVVM PDSLTGEDKL 201: CEPCSDTAAE TSTQENEDLH STEQEHCEKI VEESAQAEAE NPQEVASVRT VKTRWDAGDK IEEEQEEDPE DVFETGCIFI EYRRPEATCD AAHSLHGRLY 301: DNRIVKAEYV SKELYQIRFP SG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)