suba logo
AT2G33380.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Caleosin-related family protein
Curator
Summary (TAIR10)
Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress.
Computational
Description (TAIR10)
RESPONSIVE TO DESSICATION 20 (RD20); FUNCTIONS IN: lipoxygenase activity, calcium ion binding; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast membrane, microsome, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: seed gene 1 (TAIR:AT4G26740.1); Has 344 Blast hits to 339 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:3248EC:1.11.2.3eggNOG:ENOG410IVG5eggNOG:ENOG4111R51EMBL:AB039924EMBL:AC002332EMBL:AK317039
EMBL:AY062661EMBL:AY063964EMBL:AY093321EMBL:AY096405EMBL:CP002685EnsemblPlants:AT2G33380EnsemblPlants:AT2G33380.1
entrez:817901GeneID:817901Genevisible:O22788GO:GO:0005509GO:GO:0005773GO:GO:0005783GO:GO:0009269
GO:GO:0009409GO:GO:0009620GO:GO:0009651GO:GO:0009737GO:GO:0009751GO:GO:0010118GO:GO:0012511
GO:GO:0031407GO:GO:0031969GO:GO:0043231GO:GO:0050832GO:GO:1902609GO:GO:1990137GO:GO:2000377
hmmpanther:PTHR31495hmmpanther:PTHR31495:SF3HOGENOM:HOG000217500InParanoid:O22788IntAct:O22788InterPro:IPR007736KEGG:00073+1.11.2.3
KEGG:ath:AT2G33380KO:K17991OMA:PDTEHPNPaxDb:O22788Pfam:O22788Pfam:PF05042PhylomeDB:O22788
PIR:G84744PRIDE:O22788PRO:PR:O22788Proteomes:UP000006548RefSeq:NP_001031472.1RefSeq:NP_180896.1STRING:3702.AT2G33380.1
TAIR:AT2G33380tair10-symbols:CLO-3tair10-symbols:RD20UniGene:At.25464UniProt:O22788
Coordinates (TAIR10) chr2:-:14144984..14146374
Molecular Weight (calculated) 26601.40 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.36
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGEAEALAT TAPLAPVTSQ RKVRNDLEET LPKPYMARAL AAPDTEHPNG TEGHDSKGMS VMQQHVAFFD QNDDGIVYPW ETYKGFRDLG FNPISSIFWT
101: LLINLAFSYV TLPSWVPSPL LPVYIDNIHK AKHGSDSSTY DTEGRYVPVN LENIFSKYAL TVKDKLSFKE VWNVTEGNRM AIDPFGWLSN KVEWILLYIL
201: AKDEDGFLSK EAVRGCFDGS LFEQIAKERA NSRKQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)