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AT2G33370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L14p/L23e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Protein Annotations
BioGrid:24746eggNOG:COG0093eggNOG:KOG0901EMBL:AC000104EMBL:AC002332EMBL:AC022287EMBL:AY042843
EMBL:AY054508EMBL:AY072481EMBL:AY081677EMBL:AY086853EMBL:AY088227EMBL:AY088893EMBL:CP002684
EMBL:CP002685EMBL:CP002686EMBL:Z18371EMBL:Z18477EnsemblPlants:AT1G04480.1EnsemblPlants:AT2G33370EnsemblPlants:AT2G33370.1
EnsemblPlants:AT3G04400.1entrez:817900entrez:819595entrez:839511ExpressionAtlas:P49690Gene3D:2.40.150.20GeneID:817900
GeneID:819595GeneID:839511Genevisible:P49690GO:GO:0003735GO:GO:0005730GO:GO:0006412GO:GO:0022625
GO:GO:0070180HAMAP:MF_01367hmmpanther:PTHR11761hmmpanther:PTHR11761:SF10InParanoid:P49690InterPro:IPR000218InterPro:IPR019972
iPTMnet:P49690KEGG:ath:AT1G04480KEGG:ath:AT2G33370KO:K02894OMA:ELRKKTMPANTHER:PTHR11761PaxDb:P49690
Pfam:P49690Pfam:PF00238PhylomeDB:P49690PIR:F84744PRIDE:P49690PRO:PR:P49690PROSITE:PS00049
ProteinModelPortal:P49690Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_180895.1RefSeq:NP_187090.1RefSeq:NP_563707.1scanprosite:PS00049SMART:SM01374SMR:P49690
STRING:3702.AT3G04400.1SUPFAM:SSF50193TAIR:AT1G04480TAIR:AT2G33370TAIR:AT3G04400UniGene:At.11034UniGene:At.20792
UniGene:At.22254UniGene:At.28146UniProt:P49690UniProt:Q1H559
Coordinates (TAIR10) chr2:-:14143718..14144644
Molecular Weight (calculated) 15027.70 Da
IEP (calculated) 11.19
GRAVY (calculated) -0.18
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKRGRGGTS GNKFRMSLGL PVAATVNCAD NTGAKNLYII SVKGIKGRLN RLPSACVGDM VMATVKKGKP DLRKKVLPAV IVRQRKPWRR KDGVFMYFED
101: NAGVIVNPKG EMKGSAITGP IGKECADLWP RIASAANAIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)