suba logo
AT2G33330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata-located protein 3
Curator
Summary (TAIR10)
Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational
Description (TAIR10)
plasmodesmata-located protein 3 (PDLP3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 2 (TAIR:AT1G04520.1); Has 999 Blast hits to 950 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3243eggNOG:ENOG410IFQVeggNOG:ENOG410YCB5EMBL:AC002332EMBL:AY042813EMBL:AY081690EMBL:CP002685
EnsemblPlants:AT2G33330EnsemblPlants:AT2G33330.1entrez:817896GeneID:817896Genevisible:O22784GO:GO:0009506GO:GO:0010497
GO:GO:0016021GO:GO:0046739Gramene:AT2G33330.1hmmpanther:PTHR32080hmmpanther:PTHR32080:SF4HOGENOM:HOG000083529InParanoid:O22784
InterPro:IPR002902KEGG:ath:AT2G33330OMA:CYLLYEIPaxDb:O22784Pfam:O22784Pfam:PF01657Pfscan:PS51473
PhylomeDB:O22784PIR:B84744PRIDE:O22784PRO:PR:O22784PROSITE:PS51473ProteinModelPortal:O22784Proteomes:UP000006548
RefSeq:NP_565764.1SMR:O22784STRING:3702.AT2G33330.1TAIR:AT2G33330tair10-symbols:PDLP3TCDB:1.I.2.1.1TMHMM:TMhelix
UniGene:At.22255UniProt:O22784
Coordinates (TAIR10) chr2:-:14123181..14125028
Molecular Weight (calculated) 32660.20 Da
IEP (calculated) 8.87
GRAVY (calculated) 0.01
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFYSLKQLL LLYIIIMALF SDLKLAKSSS PEYTNLIYKG CARQRLSDPS GLYSQALSAM YGLLVTQSTK TRFYKTTTGT TSQTSVTGLF QCRGDLSNND
101: CYNCVSRLPV LSGKLCGKTI AARVQLSGCY LLYEISGFAQ ISGMELLFKT CGKNNVAGTG FEQRRDTAFG VMQNGVVQGH GFYATTYESV YVLGQCEGDI
201: GDSDCSGCIK NALQRAQVEC GSSISGQIYL HKCFVGYSFY PNGVPKRSSP YPSSGSSGSS SSSSSSGTTG KTVAIIVGGT AGVGFLVICL LFVKNLMKKK
301: YDDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)