AT2G33100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase-like D1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a gene similar to cellulose synthase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase-like D1 (CSLD1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen germination, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3587 Blast hits to 2817 proteins in 647 species: Archae - 12; Bacteria - 1535; Metazoa - 3; Fungi - 28; Plants - 1916; Viruses - 7; Other Eukaryotes - 86 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14036494..14040044 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116073.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1036 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSPPKKTL NSQSSSLSRP PQAVKFGRRT SSGRIVSLSR DDDMDVSGDY SGQNDYINYT VLMPPTPDNQ PAGSSGSTSE SKGDANRGGG GGDGPKMGNK 0101: LERRLSVMKS NNKSMLLRSQ TGDFDHNRWL FESKGKYGIG NAFWSEEDDT YDGGVSKSDF LDKPWKPLTR KVQIPAKILS PYRLLIVIRL VIVFFFLWWR 0201: ITNPNEDAMW LWGLSIVCEI WFAFSWILDI LPKLNPINRA TDLAALHDKF EQPSPSNPTG RSDLPGVDVF VSTADPEKEP PLVTANTLLS ILAVDYPIEK 0301: LSAYISDDGG AILTFEAMAE AVRFAEYWVP FCRKHDIEPR NPDSYFSIKK DPTKNKKRQD FVKDRRWIKR EYDEFKVRIN GLPEQIKKRA EQFNMREELK 0401: EKRIAREKNG GVLPPDGVEV VKATWMADGT HWPGTWFEPK PDHSKGDHAG ILQIMSKVPD LEPVMGGPNE GALDFTGIDI RVPMFAYVSR EKRPGFDHNK 0501: KAGAMNGMVR ASAILSNGAF ILNLDCDHYI YNSKAIKEGM CFMMDRGGDR ICYIQFPQRF EGIDPSDRYA NHNTVFFDGN MRALDGLQGP VYVGTGCMFR 0601: RYALYGFNPP RANEYSGVFG QEKAPAMHVR TQSQASQTSQ ASDLESDTQP LNDDPDLGLP KKFGNSTMFT DTIPVAEYQG RPLADHMSVK NGRPPGALLL 0701: PRPPLDAPTV AEAIAVISCW YEDNTEWGDR IGWIYGSVTE DVVTGYRMHN RGWRSVYCIT KRDAFRGTAP INLTDRLHQV LRWATGSVEI FFSKNNAMFA 0801: TRRLKFLQRV AYLNVGIYPF TSIFLVVYCF LPALCLFSGK FIVQSLDIHF LSYLLCITVT LTLISLLEVK WSGIGLEEWW RNEQFWLIGG TSAHLAAVVQ 0901: GLLKVIAGIE ISFTLTSKAS GEDEDDIFAD LYIVKWTGLF IMPLTIIIVN LVAIVIGASR TIYSVIPQWG KLMGGIFFSL WVLTHMYPFA KGLMGRRGKV 1001: PTIVYVWSGL VSITVSLLWI TISPPDDVSG SGGISV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)