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AT2G32980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIDYeggNOG:ENOG410XQMAEMBL:AC003033EMBL:AF439838EMBL:AY087746EMBL:AY125566EMBL:CP002685
EnsemblPlants:AT2G32980EnsemblPlants:AT2G32980.1entrez:817860GeneID:817860Genevisible:O48767GO:GO:0000911GO:GO:0005874
GO:GO:0007020GO:GO:0007067GO:GO:0031023GO:GO:0051225Gramene:AT2G32980.1hmmpanther:PTHR16039HOGENOM:HOG000070457
IntAct:O48767InterPro:IPR028346iPTMnet:O48767KEGG:ath:AT2G32980KO:K16585ncoils:CoilOMA:GESDCMT
PaxDb:O48767Pfam:PF15003PhylomeDB:O48767PIR:T01109Proteomes:UP000006548RefSeq:NP_565760.1STRING:3702.AT2G32980.1
TAIR:AT2G32980UniGene:At.12478UniProt:O48767
Coordinates (TAIR10) chr2:-:13997569..13999715
Molecular Weight (calculated) 33020.80 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.63
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)