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AT2G32950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light.
Computational
Description (TAIR10)
CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: SPA1-related 2 (TAIR:AT4G11110.1); Has 42218 Blast hits to 27649 proteins in 756 species: Archae - 30; Bacteria - 4454; Metazoa - 17716; Fungi - 8958; Plants - 5306; Viruses - 46; Other Eukaryotes - 5708 (source: NCBI BLink).
Protein Annotations
BioGrid:3204DIP:DIP-32850NEC:6.3.2.-eggNOG:ENOG410ISDPeggNOG:ENOG410XNTUEMBL:AC003033EMBL:AJ000535
EMBL:AJ000536EMBL:BT025337EMBL:CP002685EMBL:L24437EnsemblPlants:AT2G32950EnsemblPlants:AT2G32950.1entrez:817857
Gene3D:2.130.10.10Gene3D:3.30.40.10GeneID:817857Genevisible:P43254GO:GO:0000152GO:GO:0004842GO:GO:0005634
GO:GO:0005737GO:GO:0006281GO:GO:0008270GO:GO:0009585GO:GO:0009640GO:GO:0009641GO:GO:0009647
GO:GO:0009649GO:GO:0010119GO:GO:0016604GO:GO:0016874GO:GO:0032436GO:GO:0042802GO:GO:0046283
GO:GO:0048573GO:GO:0061630GO:GO:0080008Gramene:AT2G32950.1hmmpanther:PTHR22847hmmpanther:PTHR22847:SF451HOGENOM:HOG000006123
InParanoid:P43254IntAct:P43254InterPro:IPR001680InterPro:IPR001841InterPro:IPR013083InterPro:IPR015943InterPro:IPR017907
InterPro:IPR017986InterPro:IPR019775InterPro:IPR033313KEGG:ath:AT2G32950KO:K10143MINT:MINT-189205ncoils:Coil
OMA:FSTRMTRPANTHER:PTHR22847:SF451PaxDb:P43254Pfam:P43254Pfam:PF00097Pfam:PF00400Pfscan:PS50082
Pfscan:PS50089Pfscan:PS50294PhylomeDB:P43254PIR:T01112PRIDE:P43254PRO:PR:P43254PROSITE:PS00518
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50089PROSITE:PS50294ProteinModelPortal:P43254Proteomes:UP000006548Reactome:R-ATH-349425
RefSeq:NP_180854.1scanprosite:PS00518scanprosite:PS00678SMART:SM00184SMART:SM00320SMR:P43254STRING:3702.AT2G32950.1
SUPFAM:SSF50978SUPFAM:SSF57850TAIR:AT2G32950tair10-symbols:ATCOP1tair10-symbols:COP1tair10-symbols:DET340tair10-symbols:EMB168
tair10-symbols:FUS1UniGene:At.298UniPathway:UPA00143UniProt:P43254
Coordinates (TAIR10) chr2:+:13978000..13983282
Molecular Weight (calculated) 76191.70 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.56
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)