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AT2G32840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G04930.1); Has 812 Blast hits to 721 proteins in 178 species: Archae - 4; Bacteria - 123; Metazoa - 186; Fungi - 136; Plants - 186; Viruses - 37; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZWJeggNOG:ENOG410Y4XPEMBL:AK117550EMBL:BT005099EMBL:CP002685EnsemblPlants:AT2G32840EnsemblPlants:AT2G32840.1
entrez:817845ExpressionAtlas:Q8GYK6GeneID:817845GO:GO:0007049GO:GO:0017053Gramene:AT2G32840.1hmmpanther:PTHR31336
HOGENOM:HOG000093098IntAct:Q8GYK6InterPro:IPR028226KEGG:ath:AT2G32840ncoils:CoilOMA:GHKKARSPfam:PF15306
PhylomeDB:Q8GYK6Proteomes:UP000006548RefSeq:NP_180843.2STRING:3702.AT2G32840.1TAIR:AT2G32840UniGene:At.46123UniProt:Q8GYK6
Coordinates (TAIR10) chr2:-:13933101..13934836
Molecular Weight (calculated) 37385.30 Da
IEP (calculated) 10.31
GRAVY (calculated) -0.82
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP
101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK
201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR
301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)