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AT2G32600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species: Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678; Viruses - 906; Other Eukaryotes - 2528 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5246eggNOG:KOG0227EMBL:AC004681EMBL:AY052725
EMBL:AY098956EMBL:CP002685EnsemblPlants:AT2G32600EnsemblPlants:AT2G32600.1
entrez:817820GeneID:817820GO:GO:0003676GO:GO:0005634
GO:GO:0008270Gramene:AT2G32600.1hmmpanther:PTHR23205hmmpanther:PTHR23205:SF0
HOGENOM:HOG000191688InterPro:IPR000690InterPro:IPR003604InterPro:IPR031781
KEGG:ath:AT2G32600KO:K12826OMA:RFWTHWNPfam:PF12874
Pfam:PF16835Pfscan:PS50171PhylomeDB:O80897PIR:T02559
PRO:PR:O80897PROSITE:PS50171Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_565747.1SMART:SM00451SMR:O80897STRING:3702.AT2G32600.1
SUPFAM:SSF57667TAIR:AT2G32600UniGene:At.12771UniProt:O80897
Coordinates (TAIR10) chr2:-:13833779..13835525
Molecular Weight (calculated) 31371.40 Da
IEP (calculated) 10.08
GRAVY (calculated) -0.94
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MDREWGSKPG SGGAASGQNE AIDRRERLRR LALETIDLAK DPYFMRNHLG SYECKLCLTL HNNEGNYLAH TQGKRHQTNL AKRAAREAKD APTKPQPLKR
101: NVSVRRTVKI GRPGYRVTKQ YDPELQQRSL LFQIEYPEIE DNIKPRHRFM SSYEQKVQPY DKSYQYLLFA AEPYEIIAFK VPSTEVDKST PKFFSHWDPD
201: SKMFTLQVYF KPTKPEPNKP QSAVGANGLP PPPPPPPHQA QPPPPPPSGL FPPPPPPMAN NGFRPMPPAG GFGHPNM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)