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AT2G32590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5229eggNOG:KOG2328EMBL:AB193292EMBL:AC004681EMBL:CP002685EnsemblPlants:AT2G32590EnsemblPlants:AT2G32590.1
entrez:817819GeneID:817819Genevisible:Q564K3GO:GO:0000793GO:GO:0000796GO:GO:0005737GO:GO:0007076
GO:GO:0051301Gramene:AT2G32590.1hmmpanther:PTHR13108HOGENOM:HOG000264360InParanoid:Q564K3InterPro:IPR022816KEGG:ath:AT2G32590
KO:K06676OMA:VENATNQPaxDb:Q564K3Pfam:PF05786Pfam:Q564K3PhylomeDB:Q564K3PIR:T02558
PRIDE:Q564K3PRO:PR:Q564K3ProteinModelPortal:Q564K3Proteomes:UP000006548Reactome:R-ATH-2514853RefSeq:NP_180818.2STRING:3702.AT2G32590.1
TAIR:AT2G32590UniGene:At.53004UniProt:Q564K3
Coordinates (TAIR10) chr2:-:13829420..13833209
Molecular Weight (calculated) 75368.80 Da
IEP (calculated) 4.41
GRAVY (calculated) -0.83
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MDESLTPNPK QKPASTTTRI QAPTSPFFLG SNDDRLEREQ ARAARAAASR RRSVIFARGS QPETESDPCF DKQQILELFQ NCIKLASENK INQKNTWELN
101: LIDHLCEIIK VEDENNTETN FQKASCTLEA GVKIYSMRVD SVHSEAYKVL GGITRAGHDD GGDHEDAAGA VENATNQKKQ PEKKISPLST LEPSFDALNV
201: KKFDVAFAVD PLYHQTSAQF DEGGAKGLLL NNLGVYGGCQ VLFDSQEIPG KLVSSANKHD KSETIDLSFV KECVEQMVLN MRKKDEIVPS LRAIINQFDE
301: ENQRPSDTFS CGQQTTESFD ISHGNDASYA DDDEGYENFG TSFDYEGQSG DVDENFGPNE AEPIYSNFHE EVEPASLQDM DSDDRLENVD DYLFLSLGIS
401: SKQNSWAGPD HWKYRKTKGP DVQPASEIKS SPPAKKTRKK KQAEPELDFA KALEEEMPDI FAPPKNPKTL LLPASRTPCQ TKLPEDCHYQ PENLIKLFLL
501: PNVMCLGRRR RKNSGETSRQ QPDDYEHGES WGNDNVYDDD DGPFDDNEND QSDAEDTNTL ISQPRQVNKI DVQYDKASKQ VDVQVLKETL WECLQESHQP
601: PIQDEEHQQE PPESRSFKVL LASFPDDCQA AERTQDISPH LCFICLLHLA NEHNLSLIGS QNLDDLTIHL A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)