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AT2G32560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G26850.1); Has 86 Blast hits to 86 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
DNASU:817817eggNOG:ENOG410IJP6eggNOG:ENOG410ZFSGEMBL:AC004681
EMBL:AY074536EMBL:AY085567EMBL:AY096469EMBL:CP002685
EnsemblPlants:AT2G32560EnsemblPlants:AT2G32560.1entrez:817817GeneID:817817
Genevisible:Q8RY82Gramene:AT2G32560.1hmmpanther:PTHR31482hmmpanther:PTHR31482:SF2
HOGENOM:HOG000030653InParanoid:Q8RY82InterPro:IPR001810KEGG:ath:AT2G32560
OMA:CKEEIAMPaxDb:Q8RY82Pfam:PF00646Pfam:Q8RY82
Pfscan:PS50181PhylomeDB:Q8RY82PIR:T02555PRIDE:Q8RY82
PRO:PR:Q8RY82PROSITE:PS50181ProteinModelPortal:Q8RY82Proteomes:UP000006548
RefSeq:NP_850191.1SMR:Q8RY82SUPFAM:SSF81383TAIR:AT2G32560
UniGene:At.27709UniProt:Q8RY82
Coordinates (TAIR10) chr2:+:13824820..13826761
Molecular Weight (calculated) 43077.40 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.41
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLYFLITCL SFFFFTKSLS LPPWASETKT LLSFYFIKNP FMNTLHQTKH DPASPVIDQM SVLDLPELAL DCILDLLPPS GLCSMARVCS SLRERCVSDH
101: LWEKHLKTKW GKILGPAAHR EWQCYISSST YHLDSPHHQT GNLGFAKIIS LIRSLSSVFR EDKQRRGYAS SLPLDSSMSC YLSLETGRFW FPAQVYNREN
201: GHVGFMLSCY DAELSYDTHT DTFQARYPPH GRRASAIEKG VTWDRIRAAP IDASPHLLHV SDSLKELKPG DHIEIQWRRN KEFPYGWWYG LVRHLESCDG
301: DHNHCHCHLS ETVVLEFNQY TVGSRWRRTM IMRDHKEEGN EEDGFYGGIR KLNCKEEIAM WKRHWPCSIL E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)