suba logo
AT2G32500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Stress responsive alpha-beta barrel domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Stress responsive alpha-beta barrel domain protein; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: Stress responsive alpha-beta barrel domain protein (TAIR:AT2G31670.1); Has 68 Blast hits to 66 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKU2eggNOG:ENOG4111NY8EMBL:AK176883EMBL:BT024501
EMBL:CP002685EnsemblPlants:AT2G32500EnsemblPlants:AT2G32500.1entrez:817811
GeneID:817811Gramene:AT2G32500.1hmmpanther:PTHR33178hmmpanther:PTHR33178:SF1
HOGENOM:HOG000030484InterPro:IPR011008InterPro:IPR013097KEGG:ath:AT2G32500
OMA:VVEHVCLPfam:PF07876Pfscan:PS51502PhylomeDB:Q67XD6
PROSITE:PS51502Proteomes:UP000006548RefSeq:NP_180809.2SMART:SM00886
STRING:3702.AT2G32500.1SUPFAM:SSF54909TAIR:AT2G32500UniGene:At.38065
UniProt:Q67XD6
Coordinates (TAIR10) chr2:-:13795371..13797120
Molecular Weight (calculated) 31600.50 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.33
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHQALALPR PILTRGFVSN GGGMFVHQCR TKTPRVTFCA ADDQIASSKS NKTRKVVEHV CLLKAKEGLS EEVEKDMLDY LYTTQYQMRG IVAISVGCIG
101: DRNNEYFTHA LYMRFQKKED LDKFYENPFF LKVLNEYVTP FCHGLTNVDY ESEVEDDILA IFRKGEEYNY GEEFVLLITF AKSASEKNTK DAMDSFAQLT
201: SSLPSLIVQS TQGSNFNGSS KEFTHAAVVR FRSFDAMEIF FEGREYKDMW RSQFEPFIEK SEALHFSVDP VGTDVM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)