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AT2G32415.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.468
plasma membrane 0.349
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, cultured cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT5G35910.1); Has 4081 Blast hits to 3969 proteins in 1270 species: Archae - 0; Bacteria - 2323; Metazoa - 435; Fungi - 138; Plants - 199; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS63eggNOG:KOG2206eggNOG:KOG4373EMBL:AC005700EMBL:CP002685EMBL:EU240664EnsemblPlants:AT2G32415
EnsemblPlants:AT2G32415.1entrez:817803Gene3D:3.30.420.10GeneID:817803GO:GO:0000166GO:GO:0003676GO:GO:0005829
GO:GO:0008408hmmpanther:PTHR12124hmmpanther:PTHR12124:SF41HOGENOM:HOG000084392InterPro:IPR002121InterPro:IPR002562InterPro:IPR010997
InterPro:IPR012337iPTMnet:A9LLI8OMA:YIANCLAPaxDb:A9LLI8Pfam:PF00570Pfam:PF01612PhylomeDB:A9LLI8
PIR:H84732PRIDE:A9LLI8PRO:PR:A9LLI8ProteinModelPortal:A9LLI8Proteomes:UP000006548RefSeq:NP_850189.5SMART:SM00474
STRING:3702.AT2G32415.1-PSUPFAM:SSF47819SUPFAM:SSF53098TAIR:AT2G32415TMHMM:TMhelixUniGene:At.47141UniProt:F4ITQ6
Coordinates (TAIR10) chr2:-:13761307..13765421
Molecular Weight (calculated) 101266.00 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.46
Length 891 amino acids
Sequence (TAIR10)
(BLAST)
001: MELKEKAKVV ITVASLVAVT ILFVTEYRRR RQRRKQTSSL SSCYLHSELK PQFGFKRVLA DNSYSEFKHL KLVDASSSSL EKPSNGHPYE TEITVLLENP
101: QIEFGFLRGE CSLEMSDSYV WVETESQLKE LAEILAKEQV FAVDTEQHSL RSFLGFTALI QISTHEEDFL VDTIALHDVM SILRPVFSDP NICKVFHGAD
201: NDVIWLQRDF HIYVVNMFDT AKACEVLSKP QRSLAYLLET VCGVATNKLL QREDWRQRPL SEEMVRYART DAHYLLYIAD SLTTELKQLA TDSSSPDDRF
301: HFLLEASRRS NMTCLQLYTK ETEDFPGSAA SSSIIYRHLN GHGDKSNISL NAEELVRKLC AWRDLMGRIH DESTRYVLSD QAIVGLSCKQ PTTTEEIYDT
401: IAHIDLATES SPSLSSSVQS PYPVICSHLD DIYKMILDKL AKLDDLLPVV LKKCLGTNGT CPISVFNYSL LVNFKTKLSS HSAPKQNGHK NFKQQFTRKA
501: SRELFVKKFS CKAPVYHNCR IYANDGRLLC YCDKRKLEWY LNRGLAKLVE ENPPAIMLLF EPKGRPEDEG NDFYIQTKRN ICVGCGEGKH YLRYRIIPSC
601: YRVHFPEHLK SHRSHDIVLL CVDCHEVAHA AAERYKKQIA TEFGIPLFVR RVLDSKEAQG TSSLVEDEST GDSEDAGVSP LHLRSAAMAL LRHGNRMPSS
701: RREELLQTVK MYYGGRDLSE EDLEKALLIG LSPHERRKLE RKKGVSFKHS AEVAGMDKQE DENNDGEALA DFEKIMTVER STVVDDSGDG TSEGDGAKEL
801: NDTQCNGNTL HQQNSKLSLL GHGPHGKQIV EYLLREHGED GVRDFCQRWR KVFVDAVHPR HLPGGWNVSH SGRRDFGEFS VYNPTKRLST E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)