AT2G32415.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.573 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, cultured cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT5G35910.1); Has 4081 Blast hits to 3969 proteins in 1270 species: Archae - 0; Bacteria - 2323; Metazoa - 435; Fungi - 138; Plants - 199; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13761307..13765421 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101266.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 891 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELKEKAKVV ITVASLVAVT ILFVTEYRRR RQRRKQTSSL SSCYLHSELK PQFGFKRVLA DNSYSEFKHL KLVDASSSSL EKPSNGHPYE TEITVLLENP 101: QIEFGFLRGE CSLEMSDSYV WVETESQLKE LAEILAKEQV FAVDTEQHSL RSFLGFTALI QISTHEEDFL VDTIALHDVM SILRPVFSDP NICKVFHGAD 201: NDVIWLQRDF HIYVVNMFDT AKACEVLSKP QRSLAYLLET VCGVATNKLL QREDWRQRPL SEEMVRYART DAHYLLYIAD SLTTELKQLA TDSSSPDDRF 301: HFLLEASRRS NMTCLQLYTK ETEDFPGSAA SSSIIYRHLN GHGDKSNISL NAEELVRKLC AWRDLMGRIH DESTRYVLSD QAIVGLSCKQ PTTTEEIYDT 401: IAHIDLATES SPSLSSSVQS PYPVICSHLD DIYKMILDKL AKLDDLLPVV LKKCLGTNGT CPISVFNYSL LVNFKTKLSS HSAPKQNGHK NFKQQFTRKA 501: SRELFVKKFS CKAPVYHNCR IYANDGRLLC YCDKRKLEWY LNRGLAKLVE ENPPAIMLLF EPKGRPEDEG NDFYIQTKRN ICVGCGEGKH YLRYRIIPSC 601: YRVHFPEHLK SHRSHDIVLL CVDCHEVAHA AAERYKKQIA TEFGIPLFVR RVLDSKEAQG TSSLVEDEST GDSEDAGVSP LHLRSAAMAL LRHGNRMPSS 701: RREELLQTVK MYYGGRDLSE EDLEKALLIG LSPHERRKLE RKKGVSFKHS AEVAGMDKQE DENNDGEALA DFEKIMTVER STVVDDSGDG TSEGDGAKEL 801: NDTQCNGNTL HQQNSKLSLL GHGPHGKQIV EYLLREHGED GVRDFCQRWR KVFVDAVHPR HLPGGWNVSH SGRRDFGEFS VYNPTKRLST E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)