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AT2G32370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeodomain GLABROUS 3
Curator
Summary (TAIR10)
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.
Computational
Description (TAIR10)
homeodomain GLABROUS 3 (HDG3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, cotyledon development; LOCATED IN: nucleus; EXPRESSED IN: fruit; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 2 (TAIR:AT1G05230.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AC005700EMBL:CP002685EMBL:EF988635EnsemblPlants:AT2G32370
EnsemblPlants:AT2G32370.1entrez:817798Gene3D:1.10.10.60Gene3D:3.30.530.20
GeneID:817798Genevisible:Q9ZV65GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0008289GO:GO:0043565GO:GO:0048825
Gramene:AT2G32370.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF298HOGENOM:HOG000243256
InParanoid:Q9ZV65InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057
InterPro:IPR017970InterPro:IPR023393KEGG:ath:AT2G32370KO:K09338
ncoils:CoilOMA:VDISIDHPaxDb:Q9ZV65Pfam:PF00046
Pfam:PF01852Pfam:Q9ZV65Pfscan:PS50071Pfscan:PS50848
PhylomeDB:Q9ZV65PIR:C84732PRIDE:Q9ZV65PRO:PR:Q9ZV65
PROSITE:PS00027PROSITE:PS50071PROSITE:PS50848ProteinModelPortal:Q9ZV65
Proteomes:UP000006548RefSeq:NP_180796.2scanprosite:PS00027SMART:SM00234
SMART:SM00389SMR:Q9ZV65STRING:3702.AT2G32370.1SUPFAM:SSF46689
SUPFAM:SSF55961TAIR:AT2G32370tair10-symbols:HDG3UniGene:At.38083
UniProt:Q9ZV65
Coordinates (TAIR10) chr2:+:13742408..13745840
Molecular Weight (calculated) 80074.90 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.45
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQSNMVPVA NNGDNNNDNE NNNNNNNNGG TDNTNAGNDS GDQDFDSGNT SSGNHGEGLG NNQAPRHKKK KYNRHTQLQI SEMEAFFREC PHPDDKQRYD
101: LSAQLGLDPV QIKFWFQNKR TQNKNQQERF ENSELRNLNN HLRSENQRLR EAIHQALCPK CGGQTAIGEM TFEEHHLRIL NARLTEEIKQ LSVTAEKISR
201: LTGIPVRSHP RVSPPNPPPN FEFGMGSKGN VGNHSRETTG PADANTKPII MELAFGAMEE LLVMAQVAEP LWMGGFNGTS LALNLDEYEK TFRTGLGPRL
301: GGFRTEASRE TALVAMCPTG IVEMLMQENL WSTMFAGIVG RARTHEQIMA DAAGNFNGNL QIMSAEYQVL SPLVTTRESY FVRYCKQQGE GLWAVVDISI
401: DHLLPNINLK CRRRPSGCLI QEMHSGYSKV TWVEHVEVDD AGSYSIFEKL ICTGQAFAAN RWVGTLVRQC ERISSILSTD FQSVDSGDHI TLTNHGKMSM
501: LKIAERIART FFAGMTNATG STIFSGVEGE DIRVMTMKSV NDPGKPPGVI ICAATSFWLP APPNTVFDFL REATHRHNWD VLCNGEMMHK IAEITNGIDK
601: RNCASLLRHG HTSKSKMMIV QETSTDPTAS FVLYAPVDMT SMDITLHGGG DPDFVVILPS GFAIFPDGTG KPGGKEGGSL LTISFQMLVE SGPEARLSVS
701: SVATTENLIR TTVRRIKDLF PCQTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)