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AT2G32280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G21310.1); Has 170 Blast hits to 169 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW3TeggNOG:ENOG410YM9KEMBL:AC005700EMBL:AK175644EMBL:BT011667EMBL:CP002685EnsemblPlants:AT2G32280
EnsemblPlants:AT2G32280.1entrez:817788GeneID:817788GO:GO:0010087GO:GO:0010305GO:GO:0010588GO:GO:0016021
GO:GO:0048825Gramene:AT2G32280.1hmmpanther:PTHR31769hmmpanther:PTHR31769:SF4HOGENOM:HOG000236378InterPro:IPR009606KEGG:ath:AT2G32280
ncoils:CoilOMA:FSHHHFFPfam:PF06749PhylomeDB:Q9ZV57PIR:B84731Proteomes:UP000006548RefSeq:NP_180787.1
TAIR:AT2G32280TMHMM:TMhelixUniGene:At.38099UniProt:Q9ZV57
Coordinates (TAIR10) chr2:+:13713210..13713977
Molecular Weight (calculated) 17481.70 Da
IEP (calculated) 7.96
GRAVY (calculated) 0.76
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKIGGILVC LVIVGLDVAA AILGIQAEVA QNQVKHMRLW LFECREPSQD AFRLGLGAAA ILVMAHVLLN LVGGCLCICS QDEFQRSSST RQISMACLVL
101: TWIVFAVGFG SIVIGTMSNS KSRSSCGFTH HHFLSIGGIL CFLHALFCVA YYVSATAAKD EAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)