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AT2G32080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : purin-rich alpha 1
Curator
Summary (TAIR10)
similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication
Computational
Description (TAIR10)
purin-rich alpha 1 (PUR ALPHA-1); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUR-alpha/beta/gamma, DNA/RNA-binding (InterPro:IPR006628); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioGrid:3115DNASU:817768eggNOG:ENOG410ZKKReggNOG:KOG3074EMBL:AC006223EMBL:AF136152EMBL:AF419556
EMBL:AF446882EMBL:AY052714EMBL:CP002685EnsemblPlants:AT2G32080EnsemblPlants:AT2G32080.1entrez:817768GeneID:817768
Genevisible:Q9SKZ1GO:GO:0003677GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0046686
hmmpanther:PTHR12611HOGENOM:HOG000029731InParanoid:Q9SKZ1InterPro:IPR006628iPTMnet:Q9SKZ1KEGG:ath:AT2G32080OMA:VPYKVWS
PANTHER:PTHR12611PaxDb:Q9SKZ1Pfam:PF04845Pfam:Q9SKZ1PhylomeDB:Q9SKZ1PIR:G84728PRIDE:Q9SKZ1
PRO:PR:Q9SKZ1ProteinModelPortal:Q9SKZ1Proteomes:UP000006548RefSeq:NP_565736.1RefSeq:NP_850182.1SMART:SM00712SMR:Q9SKZ1
STRING:3702.AT2G32080.1TAIR:AT2G32080tair10-symbols:PUR ALPHA-1UniGene:At.25473UniProt:Q9SKZ1
Coordinates (TAIR10) chr2:-:13642716..13644036
Molecular Weight (calculated) 32202.70 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.44
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MEANSGGGGG AEGGRAVTGG GGGGGGSDVE LVSKTLQVEH KLFYFDLKEN PRGRYLKISE KTSATRSTII VPSSGISWFL DLFNYYVNSE EHELFSKELQ
101: LDSKVFYFDI GENRRGRFLK VSEASVSRNR STIIVPAGSS PDEGWAAFRN ILAEIHEASG LFVMPNQVKP SDGQEHLVDD VGAGFIPGHG SQQPSSSEHN
201: VDRTIDSPGQ EETGMTGVSK VIRADQKRFF FDLGNNNRGH FLRISEVAGS DRSSIILPLS GLKQFHEVIG HFVEITKDKI EGMTGANVRT VDPPQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)