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AT2G31780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARIADNE 11 (ARI11); FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G31760.1); Has 3062 Blast hits to 3040 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 1296; Fungi - 613; Plants - 626; Viruses - 5; Other Eukaryotes - 522 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XP9YeggNOG:KOG1815EMBL:AC006533
EMBL:AJ510214EMBL:CP002685EMBL:DQ446587EnsemblPlants:AT2G31780
EnsemblPlants:AT2G31780.1entrez:817735Gene3D:3.30.40.10GeneID:817735
Genevisible:Q9SKC2GO:GO:0000151GO:GO:0000209GO:GO:0004842
GO:GO:0005737GO:GO:0008270GO:GO:0016874GO:GO:0031624
GO:GO:0032436GO:GO:0042787GO:GO:0061630hmmpanther:PTHR11685
hmmpanther:PTHR11685:SF135HOGENOM:HOG000243301InParanoid:Q9SKC2InterPro:IPR001841
InterPro:IPR002867InterPro:IPR013083InterPro:IPR017907InterPro:IPR031127
KEGG:ath:AT2G31780KO:K11968OMA:NWILAKTPANTHER:PTHR11685
PaxDb:Q9SKC2Pfam:PF01485Pfam:Q9SKC2Pfscan:PS50089
PhylomeDB:Q9SKC2PIR:A84725PRO:PR:Q9SKC2PROSITE:PS00518
PROSITE:PS50089ProteinModelPortal:Q9SKC2Proteomes:UP000006548RefSeq:NP_180737.3
scanprosite:PS00518SMART:SM00647SMR:Q9SKC2STRING:3702.AT2G31780.1
SUPFAM:SSF57850TAIR:AT2G31780tair10-symbols:ARI11tair10-symbols:ATARI11
UniGene:At.53000UniPathway:UPA00143UniProt:Q9SKC2
Coordinates (TAIR10) chr2:+:13515199..13517142
Molecular Weight (calculated) 51115.90 Da
IEP (calculated) 4.74
GRAVY (calculated) -0.61
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSDRDIID IESGEEDLYS DGGNDIIDIE SGEEDLYSDG GNVSDDYNPV DDTISRSEKS YVVVKEEDIL KLQRDDIEQV STVLSVSQVE SIVLLLHYHW
101: CVSKLEDEWF TDEERIRKTV GILKEPVVDV NGTEVDIQCG ICFESYTRKE IARVSCGHPY CKTCWTGYIT TKIEDGPGCL RVKCPEPSCY AVVGQDMIDE
201: VTEKKDKDKY YRYFLRSYVE DGKKMKWCPS PGCEYAVEFG VNGSSSYDVS CLCSYKFCWN CCEDAHSPVD CETVSKWLLK NKDESENMNW ILAKTKPCPK
301: CKRPIEKNTG CNHMSCSAPC RHYFCWACLQ PLSDHKACNA FKADNEDETK RKRAKDAIDR YTHFYERWAF NQSSRLKAMS DLEKWQSVEL KQLSDIQSTP
401: ETQLSFTVDA WLQIIECRRV LKWTYAYGYY ILSQERNKRV FAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)