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AT2G31760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARIADNE 10 (ARI10); FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G31770.1); Has 3151 Blast hits to 3123 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 1297; Fungi - 638; Plants - 670; Viruses - 10; Other Eukaryotes - 536 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XP9YeggNOG:KOG1815EMBL:AC006533
EMBL:AJ510213EMBL:CP002685EMBL:DQ056560EnsemblPlants:AT2G31760
EnsemblPlants:AT2G31760.1entrez:817733Gene3D:3.30.40.10GeneID:817733
Genevisible:Q9SKC4GO:GO:0000151GO:GO:0000209GO:GO:0005737
GO:GO:0008270GO:GO:0016874GO:GO:0031624GO:GO:0032436
GO:GO:0042787GO:GO:0061630Gramene:AT2G31760.1hmmpanther:PTHR11685
hmmpanther:PTHR11685:SF135HOGENOM:HOG000243301InParanoid:Q9SKC4InterPro:IPR001841
InterPro:IPR002867InterPro:IPR013083InterPro:IPR031127KEGG:ath:AT2G31760
KO:K11968OMA:FITIEEDPANTHER:PTHR11685PaxDb:Q9SKC4
Pfam:PF01485Pfam:Q9SKC4Pfscan:PS50089PhylomeDB:Q9SKC4
PIR:G84724PRIDE:Q9SKC4PRO:PR:Q9SKC4PROSITE:PS50089
ProteinModelPortal:Q9SKC4Proteomes:UP000006548RefSeq:NP_180735.1SMART:SM00647
SMR:Q9SKC4STRING:3702.AT2G31760.1SUPFAM:SSF57850TAIR:AT2G31760
tair10-symbols:ARI10tair10-symbols:ATARI10UniGene:At.52998UniPathway:UPA00143
UniProt:Q9SKC4
Coordinates (TAIR10) chr2:+:13508493..13510390
Molecular Weight (calculated) 59450.80 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.55
Length 514 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYSDDDMID NESGEENNSD GGGNESYNYN AAVDTIILSE KSYVIIKEEE ILKLQRDDIE RVSTILFLSQ VEAIVLLLHY HWCVSKLEDE WFTDEERIRK
101: TVGILKEPVV DVNGTEVDIQ CGICFESYTR KEIASVSCGH PYCKTCWTGY ITTKIEDGPG CLRVKCPEPS CYAVVGQDMI DEVTEKKDKD KYYRYFLRSY
201: VEDGKKMKWC PSPGCECAVE FGESSGYDVA CLCSYRFCWN CSEDAHSPVD CETVSKWIFK NQDESENKNW ILANSKPCPK CKRPIEKSHG CNHMTCSASC
301: GHRFCWICGK SYSDHYACNN YVEDADHDKR TLLQSEIKRY THYYVRWVEN QSSRLKAMSD LEKFQSVQLK QLSDNQCKPK IDLQFIVDAW LQIIECRRVL
401: KWTYAYGYYL DNLAKRPLFE YLQGEAETGL ERLHHCAENE LKQFFIKSED PSDTFNAFRM KLTGLTKVTK TYFDNLVKAL ENGLADVTKS SEESADFLET
501: QKLYDAYISE GCFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)