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AT2G31450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19372224 (2009): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA glycosylase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14067 Blast hits to 14061 proteins in 2669 species: Archae - 367; Bacteria - 9308; Metazoa - 224; Fungi - 193; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G31450-MONOMERBioCyc:ARA:GQT-1208-MONOMERBRENDA:4.2.99.18EC:3.2.2.-EC:4.2.99.18eggNOG:COG0177eggNOG:KOG1921
EMBL:AC007169EMBL:AJ272248EMBL:AY063851EMBL:AY085041EMBL:AY091229EMBL:CP002685EnsemblPlants:AT2G31450
EnsemblPlants:AT2G31450.1EnsemblPlants:AT2G31450.2entrez:817703ExpressionAtlas:Q9SIC4Gene3D:1.10.1670.10Gene3D:1.10.340.30GeneID:817703
Genevisible:Q9SIC4GO:GO:0000703GO:GO:0003677GO:GO:0003906GO:GO:0005634GO:GO:0006284GO:GO:0006285
GO:GO:0019104GO:GO:0042644GO:GO:0046872GO:GO:0051539HAMAP:MF_03183hmmpanther:PTHR10359HOGENOM:HOG000252209
InParanoid:Q9SIC4InterPro:IPR000445InterPro:IPR003265InterPro:IPR003651InterPro:IPR004035InterPro:IPR004036InterPro:IPR011257
InterPro:IPR023170InterPro:IPR030841iPTMnet:Q9SIC4KEGG:ath:AT2G31450KO:K10773OMA:FYTRKASPaxDb:Q9SIC4
Pfam:PF00633Pfam:PF00730Pfam:Q9SIC4PhylomeDB:Q9SIC4PIR:H84720PRIDE:Q9SIC4PRO:PR:Q9SIC4
PROSITE:PS00764PROSITE:PS01155ProteinModelPortal:Q9SIC4Proteomes:UP000006548Reactome:R-ATH-110329Reactome:R-ATH-110357RefSeq:NP_001077988.1
RefSeq:NP_565725.1scanprosite:PS00764scanprosite:PS01155SMART:SM00478SMART:SM00525SMR:Q9SIC4STRING:3702.AT2G31450.1
SUPFAM:SSF48150TAIR:AT2G31450tair10-symbols:ATNTH1UniGene:At.10180UniProt:Q9SIC4
Coordinates (TAIR10) chr2:-:13401318..13404134
Molecular Weight (calculated) 41730.10 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.39
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MILLVNGGAA TSIHPNAARF YRIGTMSRQI HGAVSSSKHI SLKTQHPLSD SNSELAYGAS GSETRVYTRK KRLKQEPFEP LEKYSGKGVN THKLCGLPDI
101: EDFAYKKTIG SPSSSRSTET SITVTSVKTA GYPPENWVEV LEGIRQMRSS EDAPVDSMGC DKAGSFLPPT ERRFAVLLGA LLSSQTKDQV NNAAIHRLHQ
201: NGLLTPEAVD KADESTIKEL IYPVGFYTRK ATYMKKIARI CLVKYDGDIP SSLDDLLSLP GIGPKMAHLI LHIAWNDVQG ICVDTHVHRI CNRLGWVSRP
301: GTKQKTTSPE ETRVALQQWL PKEEWVAINP LLVGFGQMIC TPIRPRCEAC SVSKLCPAAF KETSSPSSKL KKSNRSKEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)