suba logo
AT2G31440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioGrid:3049eggNOG:ENOG410IGH9eggNOG:ENOG4111FIJEMBL:AC007169EMBL:AY064157EMBL:AY088444EMBL:AY097412
EMBL:CP002685EnsemblPlants:AT2G31440EnsemblPlants:AT2G31440.1entrez:817702GeneID:817702Genevisible:Q8L9G7GO:GO:0007219
GO:GO:0016021GO:GO:0016485GO:GO:0043085Gramene:AT2G31440.1hmmpanther:PTHR12889hmmpanther:PTHR12889:SF0HOGENOM:HOG000006375
InParanoid:Q8L9G7IntAct:Q8L9G7InterPro:IPR009294KEGG:ath:AT2G31440OMA:LLHTFWSPANTHER:PTHR12889PaxDb:Q8L9G7
Pfam:PF06105Pfam:Q8L9G7PhylomeDB:Q8L9G7PIR:G84720PRIDE:Q8L9G7PRO:PR:Q8L9G7ProteinModelPortal:Q8L9G7
Proteomes:UP000006548RefSeq:NP_565724.1STRING:3702.AT2G31440.1TAIR:AT2G31440TMHMM:TMhelixUniGene:At.20784UniProt:Q8L9G7
Coordinates (TAIR10) chr2:-:13399309..13400971
Molecular Weight (calculated) 27537.60 Da
IEP (calculated) 9.88
GRAVY (calculated) 0.87
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVAAGIGYA LVALGPSLSL FVSVISRKPF LILTVLSSTL LWLVSLIILS GLWRPFLPLK ANVWWPYALL VITSVCFQEG LRFLFWKVYK RLEDVLDSFA
101: DRISRPRLFL TDKLQIALAG GLGHGVAHAV FFCLSLLTPA FGPATFYVER CSKVPFFLIS AIIALAFVTI HTFSMVIAFE GYAKGNKVDQ IIVPVIHLTA
201: GMLTLVNFAS EGCVIGVPLL YLVASLTLVH CGKMVWQRLL ESRNQSSASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)