suba logo
AT2G31380.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : salt tolerance homologue
Curator
Summary (TAIR10)
a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.
Computational
Description (TAIR10)
salt tolerance homologue (STH); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, protein domain specific binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1); Has 1801 Blast hits to 1351 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 1702; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
BioGrid:3043eggNOG:ENOG410IFJBeggNOG:ENOG410YBMWEMBL:AC007169EMBL:AF323666EMBL:AF325077EMBL:AF370311
EMBL:AY063097EMBL:CP002685EnsemblPlants:AT2G31380EnsemblPlants:AT2G31380.1entrez:817696GeneID:817696Genevisible:Q9SID1
GO:GO:0000989GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009640
GO:GO:0010100Gramene:AT2G31380.1hmmpanther:PTHR31832hmmpanther:PTHR31832:SF8HOGENOM:HOG000239240InParanoid:Q9SID1IntAct:Q9SID1
InterPro:IPR000315KEGG:ath:AT2G31380OMA:NTRSANHPaxDb:Q9SID1Pfam:PF00643Pfam:Q9SID1Pfscan:PS50119
PhylomeDB:Q9SID1PIR:A84720PRIDE:Q9SID1PRO:PR:Q9SID1PROSITE:PS50119ProteinModelPortal:Q9SID1Proteomes:UP000006548
RefSeq:NP_565722.1SMART:SM00336SMR:Q9SID1STRING:3702.AT2G31380.1TAIR:AT2G31380tair10-symbols:STHUniGene:At.24192
UniGene:At.69838UniProt:Q9SID1
Coordinates (TAIR10) chr2:+:13382150..13383302
Molecular Weight (calculated) 26658.20 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.50
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)