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AT2G31360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23585650 (2013): endoplasmic reticulum endoplasmic reticulum lumen
  • PMID:23585650 (2013): Golgi
  • PMID:23585650 (2013): plastid
  • PMID:23175755 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 16:0delta9 desaturase 2
Curator
Summary (TAIR10)
homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.
Computational
Description (TAIR10)
16:0delta9 desaturase 2 (DS2); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: delta 9 desaturase 1 (TAIR:AT1G06080.1); Has 3454 Blast hits to 3454 proteins in 832 species: Archae - 0; Bacteria - 1553; Metazoa - 797; Fungi - 236; Plants - 106; Viruses - 4; Other Eukaryotes - 758 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G31360-MONOMERBioGrid:3041EC:1.14.19.-eggNOG:COG1398eggNOG:KOG1600EMBL:AC007169EMBL:AY045918
EMBL:AY079388EMBL:AY086154EMBL:CP002685EMBL:D88537EnsemblPlants:AT2G31360EnsemblPlants:AT2G31360.1entrez:817694
GeneID:817694Genevisible:Q9SID2GO:GO:0005783GO:GO:0005789GO:GO:0006636GO:GO:0016021GO:GO:0016717
GO:GO:0042761Gramene:AT2G31360.1gramene_pathway:1.14.99.-gramene_pathway:PWY-782hmmpanther:PTHR11351hmmpanther:PTHR11351:SF2HOGENOM:HOG000270353
InParanoid:Q9SID2InterPro:IPR005804InterPro:IPR015876iPTMnet:Q9SID2KEGG:ath:AT2G31360KO:K00507OMA:MAYLGWA
PaxDb:Q9SID2Pfam:PF00487Pfam:Q9SID2PhylomeDB:Q9SID2PIR:G84719PIR:T52109PRIDE:Q9SID2
PRINTS:PR00075PRO:PR:Q9SID2ProteinModelPortal:Q9SID2Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_565721.1SMR:Q9SID2
STRING:3702.AT2G31360.1TAIR:AT2G31360tair10-symbols:ADS2tair10-symbols:DS2TMHMM:TMhelixUniGene:At.14455UniPathway:UPA00658
UniProt:Q9SID2
Coordinates (TAIR10) chr2:-:13372121..13373546
Molecular Weight (calculated) 36377.50 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.14
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVTSTVEEN HQKNPSTPAA VEEKKKRRWV FWDRRWRRLD YVKFSASFTV HSLALLAPFY FTWSALWVTF LFYTIGGLGI TVSYHRNLAH RSFKVPKWLE
101: YLLAYCALLA IQGDPIDWVS THRYHHQFTD SERDPHSPKE GFWFSHLLWI YDSAYLVSKC GRRANVEDLK RQWFYRFLQK TVLFHILGLG FFLFYLGGMS
201: FVTWGMGVGA ALEVHVTCLI NSLCHIWGTR TWKTNDTSRN VWWLSVFSFG ESWHNNHHAF ESSARQGLEW WQIDISWYIV RFFEIIGLAT DVKVPTEAQR
301: RRMAIVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)