suba logo
AT2G31170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteinyl-tRNA synthetase, class Ia family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EC:6.1.1.16eggNOG:COG0215eggNOG:KOG2007EMBL:AC005311
EMBL:AC006593EMBL:AF370143EMBL:AK230142EMBL:AY051059
EMBL:CP002685EnsemblPlants:AT2G31170EnsemblPlants:AT2G31170.1entrez:817673
ExpressionAtlas:F4IPY2Gene3D:3.40.50.620GeneID:817673Genevisible:F4IPY2
GO:GO:0004817GO:GO:0005524GO:GO:0005739GO:GO:0005829
GO:GO:0006423GO:GO:0009507GO:GO:0009570GO:GO:0010197
GO:GO:0042407GO:GO:0043067GO:GO:0046872gramene_pathway:6.1.1.16
gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00041hmmpanther:PTHR10890hmmpanther:PTHR10890:SF8
InParanoid:F4IPY2InterPro:IPR009080InterPro:IPR014729InterPro:IPR015273
InterPro:IPR015803InterPro:IPR024909InterPro:IPR032678iPTMnet:F4IPY2
KEGG:00970+6.1.1.16ncoils:CoilOMA:RIFYIYQPANTHER:PTHR10890
PaxDb:F4IPY2Pfam:PF01406Pfam:PF09190PIR:D84717
PRIDE:F4IPY2PRINTS:PR00983PRO:PR:F4IPY2ProteinModelPortal:F4IPY2
Proteomes:UP000006548RefSeq:NP_565717.2SMR:F4IPY2STRING:3702.AT2G31170.1
SUPFAM:SSF47323SUPFAM:SSF52374TAIR:AT2G31170tair10-symbols:SYCO ARATH
TIGRfam:TIGR00435TIGRFAMs:TIGR00435UniGene:At.21710UniProt:F4IPY2
Coordinates (TAIR10) chr2:-:13282559..13285616
Molecular Weight (calculated) 63917.30 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.40
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSVLNLFK SCRPFTPIRF SSLPKSQFRI QFPLRPGKET QLRRCFTTLS SLTDGGAPIS GGKELWLHNT MSRKKELFKP KVEGKVGMYV CGVTAYDLSH
101: IGHARVYVTF DVLLRYLKHL GYEVSYVRNF TDVDDKIIAR AKELEEDPIS LSRRFCEEFN RDMEQLQCLD PSVQPRVSDH IPQIIDLIKQ ILDNGYAYKV
201: DGDIYFSVDK FPTYGKLSGR KLEDNRAGER VAVDTRKKHP ADFALWKAAK EGEPFWESPW GRGRPGWHIE CSAMSAAYLG YSFDIHGGGM DLVFPHHENE
301: IAQSCAACDS SNISYWIHNG FVTVDSEKMS KSLGNFFTIR QVIDLYHPLA LRLFLMGTHY RSPINYSDFL LESASERIFY IYQTLHDCES ALGEKDSTFE
401: NGSVPSDTLT SINTFRTEFV ASMSDDLLTP VTLAAMSEPL KTINDLIHTR KGKKQARREE SLKALETTIR DVLTILGLMP TSYSEVLEQL KEKALKRAGL
501: KEEDVLQRVQ ERTDARKNKE YERSDAIRKD LAKVGIALMD SPEGTTWRPA IPLALQEPVT TTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)