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AT2G31160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3020eggNOG:ENOG410IWU8eggNOG:ENOG410Y75TEMBL:AC005311
EMBL:AY056383EMBL:AY081705EMBL:CP002685EnsemblPlants:AT2G31160
EnsemblPlants:AT2G31160.1entrez:817672GeneID:817672Genevisible:O82268
GO:GO:0003677GO:GO:0005634GO:GO:0006355GO:GO:0009299
GO:GO:0009886GO:GO:0010199GO:GO:0010492GO:GO:0048441
GO:GO:0048834Gramene:AT2G31160.1hmmpanther:PTHR31165hmmpanther:PTHR31165:SF13
HOGENOM:HOG000239606InParanoid:O82268IntAct:O82268InterPro:IPR006936
KEGG:ath:AT2G31160OMA:ICHFYGHPaxDb:O82268Pfam:O82268
Pfam:PF04852Pfscan:PS51697PhylomeDB:O82268PIR:C84717
PRIDE:O82268PRO:PR:O82268PROSITE:PS51697Proteomes:UP000006548
RefSeq:NP_565716.1STRING:3702.AT2G31160.1TAIR:AT2G31160tair10-symbols:LSH3
UniGene:At.24312UniProt:O82268
Coordinates (TAIR10) chr2:+:13277903..13278562
Molecular Weight (calculated) 24124.40 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.70
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)