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AT2G30990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF688)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF688); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR:AT1G29240.1); Has 249 Blast hits to 230 proteins in 71 species: Archae - 0; Bacteria - 43; Metazoa - 23; Fungi - 18; Plants - 104; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWM5eggNOG:ENOG410YE78EMBL:CP002685EnsemblPlants:AT2G30990EnsemblPlants:AT2G30990.1EnsemblPlants:AT2G30990.2entrez:817650
ExpressionAtlas:F4IPV3GeneID:817650Gramene:AT2G30990.1Gramene:AT2G30990.2hmmpanther:PTHR33671hmmpanther:PTHR33671:SF2InterPro:IPR007789
KEGG:ath:AT2G30990OMA:PKWETIVPfam:PF05097Proteomes:UP000006548RefSeq:NP_001031451.1RefSeq:NP_180656.3STRING:3702.AT2G30990.1
TAIR:AT2G30990UniGene:At.66448UniProt:F4IPV3
Coordinates (TAIR10) chr2:-:13187776..13189761
Molecular Weight (calculated) 66235.90 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.81
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)