suba logo
AT2G30880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pleckstrin homology (PH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); Has 8327 Blast hits to 6951 proteins in 819 species: Archae - 67; Bacteria - 1101; Metazoa - 4180; Fungi - 797; Plants - 557; Viruses - 16; Other Eukaryotes - 1609 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II09eggNOG:ENOG41114AAEMBL:AY070724EMBL:AY143965
EMBL:CP002685EnsemblPlants:AT2G30880EnsemblPlants:AT2G30880.1entrez:817638
ExpressionAtlas:Q8VYJ6Gene3D:2.30.29.30GeneID:817638GO:GO:0004674
GO:GO:0005622GO:GO:0009505GO:GO:0018105GO:GO:0035556
GO:GO:0042742Gramene:AT2G30880.1hmmpanther:PTHR24356hmmpanther:PTHR24356:SF215
HOGENOM:HOG000030854IntAct:Q8VYJ6InterPro:IPR001849InterPro:IPR011993
KEGG:ath:AT2G30880ncoils:CoilOMA:LSPVNFHPfam:PF00169
Pfscan:PS50003PhylomeDB:Q8VYJ6PROSITE:PS50003Proteomes:UP000006548
RefSeq:NP_850155.1SMART:SM00233SMR:Q8VYJ6STRING:3702.AT2G30880.1
SUPFAM:SSF50729TAIR:AT2G30880UniGene:At.58604UniGene:At.71016
UniGene:At.71415UniProt:Q8VYJ6
Coordinates (TAIR10) chr2:-:13142926..13145718
Molecular Weight (calculated) 56026.20 Da
IEP (calculated) 5.64
GRAVY (calculated) -0.62
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNGASPRI VDATENSLDK IKRQLASGSG RNLLQGPLFK RSETLRKWNE RWVILDPTTG KMEYKTRRNE PTIKGTILFD ENSTISISPV NFQGLPKYNG
101: CCIYIGTPQK KDYFLCAETP GAAKAWVTTL HATQLVLKAH KEAVESLSGS GSATLGTVAT VVAAANSTAL ECSREIQAAM QISLRNALKI TPNKPIDGPL
201: DDLTIMKETL RVKDEELHNL ARELRSRDSM IKEIADKLSE TAEAAVAAAS AAHTMDEQRK IVCVEFERLT TDSQRQQEAT KLKLKELEEK TFTLSKEKDQ
301: LVKERDAALQ EAHMWRSELG KARERVVILE GAVVRAEEKV RVAEASGEAK SKEASQREAT AWTEKQELLA YVNMLQTQLQ RQQLETKQVC EEKTESTNGE
401: ASLPMTKETE KNVDKACLSI SRTASIPGEN VVHMSEEQVV NAQPPVGENE WNDIQATEAR VSDVREISAE TERDRRNSLD IPVVSPEPNV PRNDPPSESF
501: HHQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)