AT2G30830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.976 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase | ||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30840.1); Has 8436 Blast hits to 8403 proteins in 1008 species: Archae - 0; Bacteria - 1171; Metazoa - 115; Fungi - 900; Plants - 4884; Viruses - 0; Other Eukaryotes - 1366 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:13132707..13134284 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40198.60 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.20 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
Length | 358 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGNYDRAGE VKAFDQMKIG VKGLVDAGIT KVPRIFHHQD VAVTNPKPSS TLEIPTIDVG GGVFESTVTR KSVIAKVRAA VEKFGFFQVI NHGIPLEVME 101: SMKDGIRGFH EQDSEVKKTF YSRDITKKVK YNTNFDLYSS QAANWRDTLT MVMAPDVPQA GDLPVICREI MLEYSKRMMK LGELIFELLS EALGLKPNHL 201: KELNCAKSLS LLSHYYPPCP EPDRTFGISS HTDISFITIL LQDHIGGLQV LHDGYWIDVP PNPEALIVNL GDLLQLITND KFVSVEHRVL ANRGEEPRIS 301: SASFFMHTIP NEQVYGPMKE LLSKQNPPKY RNTTTTEMAR HYLARGLDGT SPLLHFRI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)