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AT2G30590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 21
Curator
Summary (TAIR10)
Encodes WRKY DNA-binding protein 21 (WRKY21).
Computational
Description (TAIR10)
WRKY DNA-binding protein 21 (WRKY21); FUNCTIONS IN: calmodulin binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 74 (TAIR:AT5G28650.1); Has 39192 Blast hits to 15053 proteins in 688 species: Archae - 6; Bacteria - 1092; Metazoa - 13773; Fungi - 4123; Plants - 4597; Viruses - 447; Other Eukaryotes - 15154 (source: NCBI BLink).
Protein Annotations
BioGrid:2958eggNOG:ENOG410IKRFeggNOG:ENOG410YIPUEMBL:AF272747EMBL:AY136441EMBL:BT000231EMBL:CP002685
EMBL:U93215EnsemblPlants:AT2G30590EnsemblPlants:AT2G30590.1entrez:817609Gene3D:2.20.25.80GeneID:817609Genevisible:O04336
GO:GO:0003700GO:GO:0005516GO:GO:0005634GO:GO:0006351GO:GO:0043565Gramene:AT2G30590.1hmmpanther:PTHR31282
hmmpanther:PTHR31282:SF6HOGENOM:HOG000029200InParanoid:O04336IntAct:O04336InterPro:IPR003657InterPro:IPR018872KEGG:ath:AT2G30590
MINT:MINT-1339182ncoils:CoilOMA:TYPENIRPaxDb:O04336Pfam:O04336Pfam:PF03106Pfam:PF10533
Pfscan:PS50811PhylomeDB:O04336PIR:C84710PRIDE:O04336PRO:PR:O04336PROSITE:PS50811ProteinModelPortal:O04336
Proteomes:UP000006548RefSeq:NP_565703.1SMART:SM00774SMR:O04336STRING:3702.AT2G30590.1SUPFAM:0050605SUPFAM:SSF118290
TAIR:AT2G30590tair10-symbols:WRKY21UniGene:At.14727UniProt:O04336
Coordinates (TAIR10) chr2:+:13033891..13035303
Molecular Weight (calculated) 43007.90 Da
IEP (calculated) 10.31
GRAVY (calculated) -0.88
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)