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AT2G30570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II reaction center W
Curator
Summary (TAIR10)
Encodes a protein similar to photosystem II reaction center subunit W.
Computational
Description (TAIR10)
photosystem II reaction center W (PSBW); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbW, class 2 (InterPro:IPR009806); Has 77 Blast hits to 77 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT2G30570-MONOMERBioGrid:2955eggNOG:ENOG410J13CeggNOG:ENOG410XZ0YEMBL:AF325042EMBL:AF375448EMBL:AY087402
EMBL:AY143958EMBL:CP002685EMBL:U93215EMBL:X90769EnsemblPlants:AT2G30570EnsemblPlants:AT2G30570.1entrez:817606
GeneID:817606Genevisible:Q39194GO:GO:0009523GO:GO:0009535GO:GO:0015979GO:GO:0016021GO:GO:0042549
Gramene:AT2G30570.1hmmpanther:PTHR34552HOGENOM:HOG000238324InParanoid:Q39194InterPro:IPR009806KEGG:ath:AT2G30570KO:K02721
OMA:RCSMETKPaxDb:Q39194Pfam:PF07123Pfam:Q39194PhylomeDB:Q39194PIR:A84710PIR:S60662
PRO:PR:Q39194Proteomes:UP000006548RefSeq:NP_180615.1STRING:3702.AT2G30570.1TAIR:AT2G30570tair10-symbols:PSBWTMHMM:TMhelix
UniGene:At.25082UniProt:Q39194
Coordinates (TAIR10) chr2:-:13019326..13020053
Molecular Weight (calculated) 13678.70 Da
IEP (calculated) 4.98
GRAVY (calculated) 0.49
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFTASAST VSAARPALLL KPTVAISAPV LGLPPMGKKK GGVRCSMETK QGNVSVMGAG VSAAATAALT AVMSNPAMAL VDERMSTEGT GLPFGLSNNL
101: LGWILFGVFG LIWTFFFVYT SSLEEDEESG LSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)