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AT2G30530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISYBeggNOG:ENOG41128JAEMBL:AY052678EMBL:AY063732EMBL:CP002685EMBL:U93215EnsemblPlants:AT2G30530
EnsemblPlants:AT2G30530.1entrez:817602GeneID:817602Gramene:AT2G30530.1hmmpanther:PTHR31016hmmpanther:PTHR31016:SF3HOGENOM:HOG000241349
IntAct:O04342KEGG:ath:AT2G30530ncoils:CoilOMA:FEDLEMEPhylomeDB:O04342PIR:E84709Proteomes:UP000006548
RefSeq:NP_565700.1STRING:3702.AT2G30530.1TAIR:AT2G30530UniGene:At.14722UniProt:O04342
Coordinates (TAIR10) chr2:+:13009071..13010867
Molecular Weight (calculated) 41217.20 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.75
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)