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AT2G30520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis
Computational
Description (TAIR10)
ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 1044 Blast hits to 1009 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:2950eggNOG:ENOG410II6IeggNOG:ENOG410YAX9EMBL:AF181683EMBL:AK175297EMBL:AK221310EMBL:AK221993
EMBL:AK222218EMBL:AK229759EMBL:AK229844EMBL:AK230435EMBL:AY035063EMBL:AY056359EMBL:BT000675
EMBL:CP002685EMBL:U93215EnsemblPlants:AT2G30520EnsemblPlants:AT2G30520.1entrez:817601ExpressionAtlas:Q682S0GeneID:817601
Genevisible:Q682S0GO:GO:0004871GO:GO:0005634GO:GO:0005737GO:GO:0009638GO:GO:0016567hmmpanther:PTHR32370
hmmpanther:PTHR32370:SF17HOGENOM:HOG000239180InParanoid:Q682S0IntAct:Q682S0InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356
InterPro:IPR029958iPTMnet:Q682S0KEGG:ath:AT2G30520MINT:MINT-7146830OMA:EANFNLHPANTHER:PTHR32370:SF17PaxDb:Q682S0
Pfam:PF00651Pfam:PF03000Pfam:Q682S0Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q682S0PIR:C84709
PIR:D84709PRIDE:Q682S0PRO:PR:Q682S0PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q682S0Proteomes:UP000006548
RefSeq:NP_001031446.1RefSeq:NP_001077982.1RefSeq:NP_850147.1SMART:SM00225SMR:Q682S0STRING:3702.AT2G30520.1SUPFAM:SSF54695
TAIR:AT2G30520tair10-symbols:RPT2UniGene:At.24430UniGene:At.74773UniPathway:UPA00143UniProt:Q682S0
Coordinates (TAIR10) chr2:-:13002920..13005573
Molecular Weight (calculated) 65857.80 Da
IEP (calculated) 7.61
GRAVY (calculated) -0.22
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)