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AT2G30470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : high-level expression of sugar-inducible gene 2
Curator
Summary (TAIR10)
HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50┬ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.
Computational
Description (TAIR10)
high-level expression of sugar-inducible gene 2 (HSI2); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: HSI2-like 1 (TAIR:AT4G32010.1); Has 1263 Blast hits to 1242 proteins in 97 species: Archae - 0; Bacteria - 5; Metazoa - 31; Fungi - 0; Plants - 1168; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
BioGrid:2946eggNOG:ENOG410IK2JeggNOG:ENOG410Z235EMBL:AB206553EMBL:AY062492EMBL:CP002685EMBL:U93215
EnsemblPlants:AT2G30470EnsemblPlants:AT2G30470.1entrez:817597Gene3D:2.40.330.10GeneID:817597Genevisible:Q8W4L5GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005739GO:GO:0006351GO:GO:0008270GO:GO:0009737GO:GO:0009744
GO:GO:0045892Gramene:AT2G30470.1hmmpanther:PTHR23336hmmpanther:PTHR23336:SF10HOGENOM:HOG000084353InParanoid:Q8W4L5IntAct:Q8W4L5
InterPro:IPR003340InterPro:IPR011124InterPro:IPR015300KEGG:ath:AT2G30470MINT:MINT-8189636ncoils:CoilOMA:IGWTHES
PaxDb:Q8W4L5Pfam:PF02362Pfam:PF07496Pfam:Q8W4L5Pfscan:PS50863Pfscan:PS51050PhylomeDB:Q8W4L5
PIR:G84708PRIDE:Q8W4L5PRO:PR:Q8W4L5PROSITE:PS50863PROSITE:PS51050ProteinModelPortal:Q8W4L5Proteomes:UP000006548
RefSeq:NP_850146.1SMART:SM01019SMR:Q8W4L5STRING:3702.AT2G30470.1SUPFAM:SSF101936TAIR:AT2G30470tair10-symbols:HSI2
tair10-symbols:VAL1UniGene:At.27438UniProt:Q8W4L5
Coordinates (TAIR10) chr2:-:12980904..12984724
Molecular Weight (calculated) 87006.50 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.60
Length 790 amino acids
Sequence (TAIR10)
(BLAST)
001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)