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AT2G30330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.901
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GCN5L1 family protein
Curator
Summary (TAIR10)
Putative homolog of mammalian BLOC-1 Subunit 1. Protein - protein interaction with BLOS2 and also with SNX1.Located in endomembrane system and hypothesized to be involved in endomembrane transport.
Computational
Description (TAIR10)
GCN5L1 family protein; CONTAINS InterPro DOMAIN/s: GCN5-like 1 (InterPro:IPR009395); Has 190 Blast hits to 190 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 8; Plants - 43; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:2932eggNOG:ENOG4111NESeggNOG:KOG3390EMBL:AC002338
EMBL:AK229517EMBL:BT008561EMBL:BT008702EMBL:CP002685
EnsemblPlants:AT2G30330EnsemblPlants:AT2G30330.1entrez:817583GeneID:817583
Genevisible:O22929GO:GO:0005739GO:GO:0005768GO:GO:0016197
GO:GO:0031083GO:GO:0045324GO:GO:0048364Gramene:AT2G30330.1
hmmpanther:PTHR13073hmmpanther:PTHR13073:SF0HOGENOM:HOG000005725InParanoid:O22929
IntAct:O22929InterPro:IPR009395KEGG:ath:AT2G30330MINT:MINT-8059886
ncoils:CoilOMA:MEYDCKSPaxDb:O22929Pfam:O22929
Pfam:PF06320PhylomeDB:O22929PIR:B84707PRIDE:O22929
PRO:PR:O22929Proteomes:UP000006548RefSeq:NP_180592.1STRING:3702.AT2G30330.1
TAIR:AT2G30330tair10-symbols:BLOS1UniGene:At.38369UniProt:O22929
Coordinates (TAIR10) chr2:-:12929045..12929688
Molecular Weight (calculated) 17378.70 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.63
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTPMSLSAA RGRMLPFLEK EKSEEESETL ESSLLQLIDD NRRSSLQLRE KTERSRKEAI RHAARTADLL VKAVNGGVEE CFVNEKRIES EIRNLAITVA
101: KFGKQTDQWL AVTHAVNSAV KEIGDFENWM KTMEFDCKKI TAAIRNIHED QQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)