suba logo
AT2G30300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.782
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G01630.1); Has 1130 Blast hits to 1113 proteins in 261 species: Archae - 8; Bacteria - 316; Metazoa - 4; Fungi - 113; Plants - 577; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK04eggNOG:ENOG410Y90QEMBL:AC002338EMBL:CP002685
EnsemblPlants:AT2G30300EnsemblPlants:AT2G30300.1entrez:817580GeneID:817580
GO:GO:0016021Gramene:AT2G30300.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF11
HOGENOM:HOG000238416InterPro:IPR010658InterPro:IPR020846KEGG:ath:AT2G30300
OMA:LWGATCAPfam:PF06813PhylomeDB:O22926PIR:G84706
Proteomes:UP000006548RefSeq:NP_180589.1SUPFAM:SSF103473TAIR:AT2G30300
TMHMM:TMhelixUniGene:At.38374UniProt:O22926
Coordinates (TAIR10) chr2:+:12919401..12921222
Molecular Weight (calculated) 54589.30 Da
IEP (calculated) 8.83
GRAVY (calculated) 0.58
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRKILPWLS LVAILWLQSF NGTNLSFPAY SSQLKELLKI SQFKLNYLSF ASDAGKVLGF ISGIAAVYLP LPLVLLAGGS LGFAGYGLQY LSIIKKIICW
101: INTACYIVAI NSFPVNRQVA VGITASYQGL SGKIYTDMVH SFFHTSQREE ASGYLLLNSL VPLVACLVTA PMLMRHGGDK TMSYSKDVKV GFIVLFVLTI
201: ATGIYAVATS LVSVPAVLVL VGIALFLLAP LAIPIGVGFK ELMSSRKTQQ KVHDLEAPVD KFYFVEEDHT KEEEEFEKAI IGVKEEVEWT QLWKKLDFWI
301: YFGLYLFGPT VGLVFTNNLG QIAESRGSTA TSSLVALSSS FGFFGRLLPS LLDYFFSRNK YMPSSPVSMA GSLVAMVASF LLLLIDSDIA LYIGTAMIGI
401: FSGALTSLSV TMTAELFGTK HFGVNHNIVV GSIPLGSFSF GLLAAKIYRD GAALYGDDGK CFGMHCFQTT LVFWGMLCSI AALLAAVLYI RNRKFYSQKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)