suba logo
AT2G30280.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-directed DNA methylation 4
Curator
Summary (TAIR10)
Encodes RDM4, a transcriptional regulator functioning in RNA-directed DNA methylation and plant development.
Computational
Description (TAIR10)
RNA-directed DNA methylation 4 (RDM4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1762 (InterPro:IPR013883); Has 44351 Blast hits to 18281 proteins in 1030 species: Archae - 135; Bacteria - 13377; Metazoa - 12547; Fungi - 4712; Plants - 1881; Viruses - 609; Other Eukaryotes - 11090 (source: NCBI BLink).
Protein Annotations
BioGrid:2927eggNOG:ENOG410IHZNeggNOG:ENOG410ZJRUEMBL:AC002338EMBL:AK117472EMBL:BT005437EMBL:CP002685
EnsemblPlants:AT2G30280EnsemblPlants:AT2G30280.1entrez:817578GeneID:817578Genevisible:Q8GYP3GO:GO:0003700GO:GO:0006306
GO:GO:0006342GO:GO:0006355GO:GO:0009791GO:GO:0031047Gramene:AT2G30280.1hmmpanther:PTHR31934hmmpanther:PTHR31934:SF2
HOGENOM:HOG000005726InParanoid:Q8GYP3InterPro:IPR013883KEGG:ath:AT2G30280OMA:EPQMTSVPaxDb:Q8GYP3Pfam:PF08574
Pfam:Q8GYP3PhylomeDB:Q8GYP3PIR:E84706PRIDE:Q8GYP3PRO:PR:Q8GYP3ProteinModelPortal:Q8GYP3Proteomes:UP000006548
RefSeq:NP_180587.2STRING:3702.AT2G30280.1TAIR:AT2G30280tair10-symbols:DMS4tair10-symbols:RDM4UniGene:At.38379UniProt:Q8GYP3
Coordinates (TAIR10) chr2:-:12909804..12911860
Molecular Weight (calculated) 40080.70 Da
IEP (calculated) 4.01
GRAVY (calculated) -1.19
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGVGESSTQ NEVEEKPVIV RVKRKVGQSL LDAFWLEINE RPLKRPTLDF SKLSISDSGE RGPSVAEDVK PKKVLVRHLE TVTDSETTAD IIHSFFESDH
101: NEKSCSKGKF EERKIAFKKD NRKEQRLTKS VQKQQIASEN ARFEQIWRSR KGNKEGIHEK CHFFDVIRVD TEERRDNAQE FTSLEDQKML ASFLPLLREC
201: IPTAAEEIEA DIQSSHTEEY VYDYYAVNEE MDISEDSSKN QFPLVIVEDE EEFCDGSDES DYDSEDSNAE DHPKTDYPEE EEEEEEEDDD DDDDDESEEE
301: KSEASDESDD EETSKRHVRS VLGDDEFDDY AEDVYGYSES DEEFES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)