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AT2G30260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : U2 small nuclear ribonucleoprotein B
Curator
Summary (TAIR10)
encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.
Computational
Description (TAIR10)
U2 small nuclear ribonucleoprotein B (U2B''); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: cis assembly of pre-catalytic spliceosome; LOCATED IN: nucleoplasm, Cajal body, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G06960.1); Has 1885 Blast hits to 1858 proteins in 260 species: Archae - 0; Bacteria - 2; Metazoa - 926; Fungi - 414; Plants - 327; Viruses - 1; Other Eukaryotes - 215 (source: NCBI BLink).
Protein Annotations
BioGrid:2925eggNOG:ENOG410XPZIeggNOG:KOG4206EMBL:AC002338EMBL:AK227609EMBL:AY087401EMBL:BT003068
EMBL:CP002685EnsemblPlants:AT2G30260EnsemblPlants:AT2G30260.1entrez:817576Gene3D:3.30.70.330GeneID:817576Genevisible:O22922
GO:GO:0000166GO:GO:0000354GO:GO:0005654GO:GO:0005681GO:GO:0005686GO:GO:0005737GO:GO:0015030
GO:GO:0017069Gramene:AT2G30260.1hmmpanther:PTHR10501HOGENOM:HOG000217519IntAct:O22922InterPro:IPR000504InterPro:IPR012677
InterPro:IPR024888KEGG:ath:AT2G30260KO:K11094OMA:DVVAHNNPANTHER:PTHR10501PaxDb:O22922Pfam:O22922
Pfam:PF00076Pfscan:PS50102PhylomeDB:O22922PIR:C84706PRIDE:O22922PRO:PR:O22922PROSITE:PS50102
ProteinModelPortal:O22922Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_180585.1SMART:SM00360SMR:O22922STRING:3702.AT2G30260.1
SUPFAM:SSF54928TAIR:AT2G30260tair10-symbols:U2B''UniGene:At.19782UniProt:O22922
Coordinates (TAIR10) chr2:-:12905557..12907434
Molecular Weight (calculated) 26238.70 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.56
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)